Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC004988.1-201ENST00000415237 1771 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
MSX1P28360 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC6.51□□□□□ -1.37
MSX1P28360 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX1P28360 CYP2C18-201ENST00000285979 2418 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX1P28360 AC105074.1-201ENST00000623380 3095 ntBASIC6.51□□□□□ -1.37
MSX1P28360 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX1P28360 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX1P28360 AC004672.1-201ENST00000513082 2088 ntTSL 5 BASIC6.51□□□□□ -1.37
MSX1P28360 DPPA4-201ENST00000335658 2817 ntAPPRIS P2 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX1P28360 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC6.51□□□□□ -1.37
MSX1P28360 TMOD2-203ENST00000539962 3000 ntTSL 2 BASIC6.51□□□□□ -1.37
MSX1P28360 AC119744.1-201ENST00000454746 1715 ntBASIC6.51□□□□□ -1.37
MSX1P28360 KLHL2-202ENST00000421009 2452 ntTSL 5 BASIC6.51□□□□□ -1.37
MSX1P28360 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
MSX1P28360 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX1P28360 UIMC1-207ENST00000506128 1945 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
MSX1P28360 SLC14A2-203ENST00000586448 3540 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
MSX1P28360 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
MSX1P28360 ZFP2-202ENST00000520301 2043 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
MSX1P28360 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX1P28360 SPP2-201ENST00000168148 1024 ntAPPRIS P2 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX1P28360 MT1A-201ENST00000290705 396 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX1P28360 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
MSX1P28360 RNU4-1-201ENST00000363925 141 ntBASIC6.51□□□□□ -1.37
MSX1P28360 FDPSP5-201ENST00000399474 1057 ntBASIC6.51□□□□□ -1.37
MSX1P28360 MIR548F4-201ENST00000408515 105 ntBASIC6.51□□□□□ -1.37
MSX1P28360 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC6.51□□□□□ -1.37
MSX1P28360 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
MSX1P28360 AC005517.2-201ENST00000424673 553 ntBASIC6.51□□□□□ -1.37
MSX1P28360 AC134879.1-201ENST00000426062 394 ntBASIC6.51□□□□□ -1.37
MSX1P28360 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC6.51□□□□□ -1.37
MSX1P28360 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC6.51□□□□□ -1.37
MSX1P28360 RPS3AP52-201ENST00000435639 297 ntBASIC6.51□□□□□ -1.37
MSX1P28360 AL356121.1-201ENST00000442911 156 ntBASIC6.51□□□□□ -1.37
MSX1P28360 RPL32P28-201ENST00000443577 397 ntBASIC6.51□□□□□ -1.37
MSX1P28360 DBIL5P2-201ENST00000443827 253 ntBASIC6.51□□□□□ -1.37
MSX1P28360 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC6.51□□□□□ -1.37
MSX1P28360 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC6.51□□□□□ -1.37
MSX1P28360 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC6.51□□□□□ -1.37
MSX1P28360 AL356010.1-201ENST00000456364 102 ntBASIC6.51□□□□□ -1.37
MSX1P28360 SNORA81.1-201ENST00000458922 177 ntBASIC6.51□□□□□ -1.37
MSX1P28360 RNU7-27P-201ENST00000459281 62 ntBASIC6.51□□□□□ -1.37
MSX1P28360 AC005165.2-201ENST00000466070 380 ntBASIC6.51□□□□□ -1.37
MSX1P28360 RN7SL836P-201ENST00000476140 296 ntBASIC6.51□□□□□ -1.37
MSX1P28360 RN7SL88P-201ENST00000480166 299 ntBASIC6.51□□□□□ -1.37
MSX1P28360 AL163973.1-201ENST00000484753 577 ntBASIC6.51□□□□□ -1.37
MSX1P28360 AF213884.1-201ENST00000488102 463 ntBASIC6.51□□□□□ -1.37
MSX1P28360 RPS4XP18-201ENST00000495480 763 ntBASIC6.51□□□□□ -1.37
MSX1P28360 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC6.51□□□□□ -1.37
MSX1P28360 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC6.51□□□□□ -1.37
MSX1P28360 MRPL57P6-201ENST00000506570 309 ntBASIC6.51□□□□□ -1.37
MSX1P28360 NACAP6-201ENST00000509572 622 ntBASIC6.51□□□□□ -1.37
MSX1P28360 AC114797.1-201ENST00000514003 728 ntBASIC6.51□□□□□ -1.37
MSX1P28360 AC093303.1-201ENST00000514549 295 ntBASIC6.51□□□□□ -1.37
MSX1P28360 AC026801.2-201ENST00000515352 425 ntBASIC6.51□□□□□ -1.37
MSX1P28360 RNU6-714P-201ENST00000516963 103 ntBASIC6.51□□□□□ -1.37
MSX1P28360 FBXO16-208ENST00000519471 398 ntTSL 2 BASIC6.51□□□□□ -1.37
MSX1P28360 AC011333.1-201ENST00000520587 436 ntTSL 3 BASIC6.51□□□□□ -1.37
MSX1P28360 AC022616.3-201ENST00000523940 148 ntBASIC6.51□□□□□ -1.37
MSX1P28360 AC131935.1-201ENST00000524621 333 ntBASIC6.51□□□□□ -1.37
MSX1P28360 COPS8P3-201ENST00000526024 482 ntBASIC6.51□□□□□ -1.37
MSX1P28360 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC6.51□□□□□ -1.37
MSX1P28360 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC6.51□□□□□ -1.37
MSX1P28360 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
MSX1P28360 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC6.51□□□□□ -1.37
MSX1P28360 OVCH1-AS1-202ENST00000550906 654 ntTSL 3 BASIC6.51□□□□□ -1.37
MSX1P28360 AL389895.1-201ENST00000554127 252 ntBASIC6.51□□□□□ -1.37
MSX1P28360 GOLGA6L5P-203ENST00000559768 578 ntTSL 4 BASIC6.51□□□□□ -1.37
MSX1P28360 AC068831.6-201ENST00000560522 795 ntTSL 3 BASIC6.51□□□□□ -1.37
MSX1P28360 AC090312.1-201ENST00000580637 348 ntBASIC6.51□□□□□ -1.37
MSX1P28360 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC6.51□□□□□ -1.37
MSX1P28360 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC6.51□□□□□ -1.37
MSX1P28360 APOOP1-201ENST00000604695 592 ntBASIC6.51□□□□□ -1.37
MSX1P28360 AC092960.1-201ENST00000604762 351 ntBASIC6.51□□□□□ -1.37
MSX1P28360 OR10AB1P-201ENST00000609613 938 ntBASIC6.51□□□□□ -1.37
MSX1P28360 uc_338.15-201ENST00000615470 191 ntBASIC6.51□□□□□ -1.37
MSX1P28360 MIR8089-201ENST00000620165 82 ntBASIC6.51□□□□□ -1.37
MSX1P28360 SORBS2-221ENST00000437304 3381 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
MSX1P28360 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC6.51□□□□□ -1.37
MSX1P28360 TAT-201ENST00000355962 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX1P28360 RNF6P1-201ENST00000444889 1784 ntBASIC6.51□□□□□ -1.37
MSX1P28360 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC6.51□□□□□ -1.37
MSX1P28360 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC6.51□□□□□ -1.37
MSX1P28360 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX1P28360 NAPEPLD-209ENST00000465647 2380 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX1P28360 GABRB2-209ENST00000612710 2470 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
MSX1P28360 EIF2S3-201ENST00000253039 2858 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX1P28360 FAM111B-201ENST00000343597 3488 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
MSX1P28360 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
MSX1P28360 SOS2-202ENST00000543680 3960 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
MSX1P28360 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
MSX1P28360 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC6.5□□□□□ -1.37
MSX1P28360 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
MSX1P28360 MED6-212ENST00000615788 1700 ntTSL 5 BASIC6.5□□□□□ -1.37
MSX1P28360 IFNW1-201ENST00000380229 1932 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
MSX1P28360 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC6.5□□□□□ -1.37
MSX1P28360 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
MSX1P28360 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC6.5□□□□□ -1.37
MSX1P28360 LRRC31-201ENST00000264676 2355 ntAPPRIS ALT2 TSL 2 BASIC6.5□□□□□ -1.37
MSX1P28360 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms