Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC104687.2-201ENST00000604442 342 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 AC011626.1-201ENST00000604710 562 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC6.18□□□□□ -1.42
COL8A1P27658 AC133104.2-201ENST00000615272 193 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 uc_338.11-201ENST00000619132 160 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC6.18□□□□□ -1.42
COL8A1P27658 MIR4302-201ENST00000638058 60 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 CCDC129-205ENST00000451887 3611 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
COL8A1P27658 PKIB-211ENST00000615438 1936 ntTSL 5 BASIC6.18□□□□□ -1.42
COL8A1P27658 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL8A1P27658 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL8A1P27658 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL8A1P27658 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC6.18□□□□□ -1.42
COL8A1P27658 NEDD9-208ENST00000504387 3211 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
COL8A1P27658 ZADH2-202ENST00000537114 3205 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL8A1P27658 AP003175.1-201ENST00000641383 6658 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 NUP58P1-201ENST00000502546 1738 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL8A1P27658 ZNF763-202ENST00000358987 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL8A1P27658 NLRP3P1-201ENST00000622303 1785 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL8A1P27658 KLHL5-204ENST00000504108 2690 ntTSL 2 BASIC6.18□□□□□ -1.42
COL8A1P27658 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL8A1P27658 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL8A1P27658 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
COL8A1P27658 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC6.18□□□□□ -1.42
COL8A1P27658 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC6.18□□□□□ -1.42
COL8A1P27658 LINC02275-201ENST00000508313 4365 ntTSL 2 BASIC6.18□□□□□ -1.42
COL8A1P27658 ENOX1-AS1-201ENST00000444442 3907 ntTSL 5 BASIC6.18□□□□□ -1.42
COL8A1P27658 WDR64-204ENST00000437684 2310 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL8A1P27658 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC6.17□□□□□ -1.42
COL8A1P27658 AL022068.1-201ENST00000636202 1875 ntTSL 5 BASIC6.17□□□□□ -1.42
COL8A1P27658 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL8A1P27658 ZNF841-203ENST00000594295 3819 ntAPPRIS P1 TSL 3 BASIC6.17□□□□□ -1.42
COL8A1P27658 SERPINB13-202ENST00000344731 3114 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL8A1P27658 EPHA4-203ENST00000409938 3363 ntAPPRIS P1 TSL 2 BASIC6.17□□□□□ -1.42
COL8A1P27658 KAT14-202ENST00000435364 3618 ntAPPRIS P2 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL8A1P27658 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL8A1P27658 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
COL8A1P27658 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL8A1P27658 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC6.17□□□□□ -1.42
COL8A1P27658 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL8A1P27658 SLA-201ENST00000338087 3451 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL8A1P27658 OR2AG2-202ENST00000641124 4224 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
COL8A1P27658 OR2AG2-203ENST00000641169 4221 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
COL8A1P27658 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL8A1P27658 AC011379.1-201ENST00000508713 3025 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 BCLAF1-223ENST00000628517 2512 ntTSL 5 BASIC6.17□□□□□ -1.42
COL8A1P27658 AGR2-203ENST00000419304 1778 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL8A1P27658 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL8A1P27658 BANF2-201ENST00000246090 595 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL8A1P27658 RNU6-1115P-201ENST00000362490 106 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 RNU6-1188P-201ENST00000363795 107 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 Y_RNA.515-201ENST00000384535 112 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 MIR1305-201ENST00000408300 86 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 MIR548K-201ENST00000408406 116 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 MIR548F5-201ENST00000408421 86 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 SNORA77.2-201ENST00000408571 112 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC6.17□□□□□ -1.42
COL8A1P27658 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL8A1P27658 AL450992.3-201ENST00000413192 568 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC6.17□□□□□ -1.42
COL8A1P27658 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL8A1P27658 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC6.17□□□□□ -1.42
COL8A1P27658 AC007365.2-201ENST00000428806 458 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC6.17□□□□□ -1.42
COL8A1P27658 RPL7AP71-201ENST00000451120 739 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC6.17□□□□□ -1.42
COL8A1P27658 RPL30P15-201ENST00000457129 321 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 AKR1D1P1-201ENST00000457236 936 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 AC110749.1-201ENST00000462007 357 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 MED28P2-201ENST00000475771 317 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 AC017015.1-201ENST00000477387 286 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 CFLAR-223ENST00000479953 1230 ntTSL 2 BASIC6.17□□□□□ -1.42
COL8A1P27658 AC083904.1-201ENST00000487828 231 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC6.17□□□□□ -1.42
COL8A1P27658 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC6.17□□□□□ -1.42
COL8A1P27658 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC6.17□□□□□ -1.42
COL8A1P27658 AC027308.1-201ENST00000517993 110 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 AC087854.1-201ENST00000519706 414 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC6.17□□□□□ -1.42
COL8A1P27658 FXYD2-206ENST00000532119 562 ntAPPRIS P1 TSL 3 BASIC6.17□□□□□ -1.42
COL8A1P27658 OLR1-209ENST00000543993 822 ntTSL 2 BASIC6.17□□□□□ -1.42
COL8A1P27658 APPL2-203ENST00000546731 684 ntTSL 2 BASIC6.17□□□□□ -1.42
COL8A1P27658 AC025260.1-201ENST00000548858 430 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC6.17□□□□□ -1.42
COL8A1P27658 HNRNPA1P71-201ENST00000559135 950 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
COL8A1P27658 RPL29P33-201ENST00000587474 316 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 BCRP9-201ENST00000605312 388 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 AC018889.1-201ENST00000605372 397 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC6.17□□□□□ -1.42
COL8A1P27658 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC6.17□□□□□ -1.42
COL8A1P27658 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC6.17□□□□□ -1.42
COL8A1P27658 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC6.17□□□□□ -1.42
COL8A1P27658 AC009166.2-201ENST00000624410 2833 ntBASIC6.17□□□□□ -1.42
COL8A1P27658 AC116535.1-201ENST00000499765 2335 ntTSL 2 BASIC6.17□□□□□ -1.42
COL8A1P27658 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC6.17□□□□□ -1.42
COL8A1P27658 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL8A1P27658 MRPS27-202ENST00000457646 2628 ntTSL 2 BASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms