Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RAB9AP1-201ENST00000449393 573 ntBASIC5.23□□□□□ -1.57
COL5A3P25940 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC5.23□□□□□ -1.57
COL5A3P25940 RPL7P1-201ENST00000468161 747 ntBASIC5.23□□□□□ -1.57
COL5A3P25940 RPL7P9-201ENST00000468715 747 ntBASIC5.23□□□□□ -1.57
COL5A3P25940 PPP1R11P1-201ENST00000486095 376 ntBASIC5.23□□□□□ -1.57
COL5A3P25940 DSTNP2-201ENST00000504533 515 ntBASIC5.23□□□□□ -1.57
COL5A3P25940 HPRT1P2-201ENST00000505250 544 ntBASIC5.23□□□□□ -1.57
COL5A3P25940 AP000619.3-201ENST00000535634 1127 ntBASIC5.23□□□□□ -1.57
COL5A3P25940 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC5.23□□□□□ -1.57
COL5A3P25940 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC5.23□□□□□ -1.57
COL5A3P25940 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL5A3P25940 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL5A3P25940 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL5A3P25940 AP000432.2-201ENST00000624164 2048 ntBASIC5.23□□□□□ -1.57
COL5A3P25940 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
COL5A3P25940 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC5.23□□□□□ -1.57
COL5A3P25940 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL5A3P25940 RNA5SP399-201ENST00000364003 117 ntBASIC5.23□□□□□ -1.57
COL5A3P25940 TCEA1P4-201ENST00000415066 844 ntBASIC5.23□□□□□ -1.57
COL5A3P25940 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC5.23□□□□□ -1.57
COL5A3P25940 HMGN2P31-201ENST00000432430 273 ntBASIC5.23□□□□□ -1.57
COL5A3P25940 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC5.23□□□□□ -1.57
COL5A3P25940 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC5.23□□□□□ -1.57
COL5A3P25940 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC5.23□□□□□ -1.57
COL5A3P25940 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC5.23□□□□□ -1.57
COL5A3P25940 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC5.23□□□□□ -1.57
COL5A3P25940 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC5.23□□□□□ -1.57
COL5A3P25940 AL354798.1-201ENST00000622505 329 ntBASIC5.23□□□□□ -1.57
COL5A3P25940 FAM91A3P-201ENST00000456826 2544 ntBASIC5.23□□□□□ -1.57
COL5A3P25940 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC5.22□□□□□ -1.57
COL5A3P25940 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.22□□□□□ -1.57
COL5A3P25940 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL5A3P25940 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL5A3P25940 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL5A3P25940 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.22□□□□□ -1.57
COL5A3P25940 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC5.22□□□□□ -1.57
COL5A3P25940 AC233968.1-201ENST00000611212 1300 ntBASIC5.22□□□□□ -1.57
COL5A3P25940 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
COL5A3P25940 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.22□□□□□ -1.57
COL5A3P25940 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL5A3P25940 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC5.22□□□□□ -1.57
COL5A3P25940 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC5.22□□□□□ -1.57
COL5A3P25940 AC104306.1-201ENST00000449702 371 ntBASIC5.22□□□□□ -1.57
COL5A3P25940 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC5.22□□□□□ -1.57
COL5A3P25940 AC110768.1-201ENST00000509222 400 ntBASIC5.22□□□□□ -1.57
COL5A3P25940 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC5.22□□□□□ -1.57
COL5A3P25940 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC5.22□□□□□ -1.57
COL5A3P25940 AC010487.1-201ENST00000594408 1172 ntBASIC5.22□□□□□ -1.57
COL5A3P25940 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
COL5A3P25940 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL5A3P25940 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
COL5A3P25940 CASC19-284ENST00000642142 1868 ntBASIC5.22□□□□□ -1.57
COL5A3P25940 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL5A3P25940 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
COL5A3P25940 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL5A3P25940 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.22□□□□□ -1.57
COL5A3P25940 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL5A3P25940 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC5.22□□□□□ -1.57
COL5A3P25940 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.57
COL5A3P25940 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC5.21□□□□□ -1.57
COL5A3P25940 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.21□□□□□ -1.58
COL5A3P25940 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL5A3P25940 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL5A3P25940 AC007066.1-201ENST00000392902 381 ntBASIC5.21□□□□□ -1.58
COL5A3P25940 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL5A3P25940 OR4F13P-201ENST00000428478 931 ntBASIC5.21□□□□□ -1.58
COL5A3P25940 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC5.21□□□□□ -1.58
COL5A3P25940 ACTR3BP4-201ENST00000503033 1244 ntBASIC5.21□□□□□ -1.58
COL5A3P25940 NAT2-202ENST00000520116 716 ntTSL 3 BASIC5.21□□□□□ -1.58
COL5A3P25940 HSPE1P5-201ENST00000561489 272 ntBASIC5.21□□□□□ -1.58
COL5A3P25940 AL049634.3-201ENST00000604968 457 ntBASIC5.21□□□□□ -1.58
COL5A3P25940 AC007179.3-201ENST00000604976 235 ntBASIC5.21□□□□□ -1.58
COL5A3P25940 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC5.21□□□□□ -1.58
COL5A3P25940 AC096577.2-201ENST00000611455 153 ntBASIC5.21□□□□□ -1.58
COL5A3P25940 PACRG-211ENST00000621363 360 ntTSL 5 BASIC5.21□□□□□ -1.58
COL5A3P25940 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.21□□□□□ -1.58
COL5A3P25940 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL5A3P25940 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
COL5A3P25940 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL5A3P25940 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC5.21□□□□□ -1.58
COL5A3P25940 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC5.21□□□□□ -1.58
COL5A3P25940 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
COL5A3P25940 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC5.21□□□□□ -1.58
COL5A3P25940 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A3P25940 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
COL5A3P25940 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC5.2□□□□□ -1.58
COL5A3P25940 RPS27AP15-201ENST00000447672 466 ntBASIC5.2□□□□□ -1.58
COL5A3P25940 SNORA74D-201ENST00000516404 141 ntBASIC5.2□□□□□ -1.58
COL5A3P25940 IGKV2-23-201ENST00000518729 323 ntBASIC5.2□□□□□ -1.58
COL5A3P25940 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC5.2□□□□□ -1.58
COL5A3P25940 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A3P25940 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A3P25940 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A3P25940 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
COL5A3P25940 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A3P25940 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A3P25940 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A3P25940 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC5.2□□□□□ -1.58
COL5A3P25940 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.2□□□□□ -1.58
COL5A3P25940 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms