| MT1A | P04731 | PTPRC-201 | ENST00000348564 | 4626 nt | APPRIS ALT2 TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | PJA2-202 | ENST00000361557 | 4645 nt | APPRIS P1 TSL 2 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | SLC17A3-204 | ENST00000397060 | 2052 nt | APPRIS P1 TSL 2 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | MAPK10-349 | ENST00000641767 | 3661 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | OR8H2-203 | ENST00000641311 | 3092 nt | APPRIS P2 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | ZBED6-202 | ENST00000550078 | 12481 nt | APPRIS P1 TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | TUG1-201 | ENST00000519077 | 5673 nt | TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | CLCA3P-202 | ENST00000466454 | 3412 nt | TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | CACNB4-257 | ENST00000637547 | 7658 nt | TSL 5 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | VNN2-201 | ENST00000326499 | 2118 nt | APPRIS P4 TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | ANO3-204 | ENST00000531568 | 3117 nt | APPRIS ALT2 TSL 2 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | DNAH6-201 | ENST00000237449 | 12666 nt | APPRIS P1 TSL 5 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | TOX-201 | ENST00000361421 | 4131 nt | APPRIS P1 TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | PLCB4-203 | ENST00000378493 | 5796 nt | APPRIS ALT1 TSL 2 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | MLH3-212 | ENST00000556740 | 4491 nt | APPRIS P1 TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | DTWD1-201 | ENST00000251250 | 13776 nt | APPRIS P1 TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | MYNN-202 | ENST00000356716 | 2833 nt | APPRIS P1 TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | ADGRG4-201 | ENST00000370652 | 9820 nt | APPRIS P2 TSL 5 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | MPDZ-211 | ENST00000536827 | 6176 nt | APPRIS ALT2 TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | PCDH15-211 | ENST00000395440 | 3177 nt | TSL 5 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AKAP4-201 | ENST00000358526 | 2881 nt | TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | NEDD4-201 | ENST00000338963 | 7019 nt | TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | SEC31A-203 | ENST00000348405 | 4012 nt | APPRIS ALT2 TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | MTUS1-228 | ENST00000544260 | 3650 nt | TSL 2 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | PIK3C3-201 | ENST00000262039 | 9443 nt | APPRIS P1 TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | CNTN1-201 | ENST00000347616 | 5507 nt | APPRIS P1 TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | CEP295-201 | ENST00000325212 | 8057 nt | APPRIS P2 TSL 2 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | ELAVL4-206 | ENST00000371827 | 3775 nt | APPRIS ALT1 TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | PPP1R42-201 | ENST00000324682 | 1084 nt | APPRIS P2 TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | OR5K1-201 | ENST00000332650 | 1097 nt | APPRIS P1 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | RNU1-15P-201 | ENST00000353977 | 144 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | SNORD74.4-201 | ENST00000364129 | 80 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | RNA5SP366-201 | ENST00000365454 | 123 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | ARV1-202 | ENST00000366658 | 1170 nt | TSL 5 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | C1orf194-204 | ENST00000369949 | 731 nt | TSL 2 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | LZIC-201 | ENST00000377213 | 945 nt | APPRIS P1 TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | GCNT6-201 | ENST00000379591 | 934 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | MIR141-201 | ENST00000384975 | 95 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | STON1-GTF2A1L-202 | ENST00000394754 | 3824 nt | APPRIS P1 TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | MIR1179-201 | ENST00000408703 | 91 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC016397.1-201 | ENST00000412463 | 242 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | RPL23AP26-201 | ENST00000412728 | 464 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AL589642.2-201 | ENST00000413291 | 839 nt | TSL 3 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC011933.1-201 | ENST00000413334 | 321 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | P2RY10P2-201 | ENST00000416730 | 913 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC064875.1-202 | ENST00000421112 | 561 nt | TSL 4 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | RBMY1KP-201 | ENST00000423480 | 476 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC090505.2-201 | ENST00000427064 | 464 nt | TSL 3 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | UTS2B-203 | ENST00000427544 | 676 nt | APPRIS P1 TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC073335.1-201 | ENST00000427776 | 363 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC016712.1-201 | ENST00000431088 | 378 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AL139824.1-201 | ENST00000431983 | 453 nt | TSL 3 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | CEACAMP1-201 | ENST00000434624 | 1035 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | MAPRE1P3-201 | ENST00000435438 | 796 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC008278.2-201 | ENST00000438178 | 409 nt | TSL 3 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AL512326.1-201 | ENST00000443050 | 721 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AL691497.1-201 | ENST00000443270 | 449 nt | TSL 2 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AP000844.1-201 | ENST00000446631 | 577 nt | TSL 3 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AL512380.1-202 | ENST00000447728 | 543 nt | TSL 5 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | ABCF2P2-201 | ENST00000450549 | 296 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC009220.1-201 | ENST00000451614 | 275 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | RPL10P17-201 | ENST00000453852 | 316 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC133473.1-201 | ENST00000455173 | 299 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | LINC01014-203 | ENST00000455307 | 548 nt | TSL 2 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC123023.1-201 | ENST00000455974 | 555 nt | TSL 4 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC068196.1-201 | ENST00000456895 | 833 nt | TSL 3 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC116533.1-201 | ENST00000459748 | 321 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | RPL35AP15-201 | ENST00000468042 | 339 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | RN7SL303P-201 | ENST00000469773 | 251 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | NDUFA5P9-201 | ENST00000472609 | 340 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC117430.1-201 | ENST00000474711 | 801 nt | TSL 5 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | RN7SL691P-201 | ENST00000494487 | 301 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC104164.2-201 | ENST00000496953 | 495 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | SNHG27-203 | ENST00000514222 | 680 nt | TSL 3 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | SLIT2-IT1-201 | ENST00000515882 | 601 nt | TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | RNA5SP73-201 | ENST00000516744 | 108 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC107373.1-201 | ENST00000522570 | 603 nt | TSL 3 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC090281.1-201 | ENST00000523019 | 276 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | PHBP17-201 | ENST00000528576 | 541 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC006064.5-201 | ENST00000541782 | 248 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | SPTY2D1-AS1-203 | ENST00000542172 | 331 nt | APPRIS ALT2 TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AL355095.1-201 | ENST00000554451 | 539 nt | TSL 2 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AL109766.1-201 | ENST00000555080 | 552 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | PSMB7P1-201 | ENST00000556349 | 514 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC018552.1-201 | ENST00000562099 | 811 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC144836.1-201 | ENST00000575911 | 340 nt | TSL 2 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AJ003147.1-201 | ENST00000576762 | 454 nt | TSL 3 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC007952.9-201 | ENST00000584365 | 191 nt | TSL 3 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | LINC01862-201 | ENST00000593792 | 478 nt | TSL 2 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC010422.4-201 | ENST00000601420 | 533 nt | TSL 3 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | TEX41-238 | ENST00000604253 | 709 nt | TSL 5 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | FAM27D1-201 | ENST00000612308 | 341 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | 5_8S_rRNA.1-201 | ENST00000614365 | 152 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | ATXN3-251 | ENST00000617719 | 1074 nt | TSL 5 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | HMGN2-210 | ENST00000619352 | 1148 nt | APPRIS P1 TSL 1 (best) BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC244196.2-201 | ENST00000621184 | 411 nt | APPRIS P1 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | THRA1/BTR-204 | ENST00000621191 | 513 nt | TSL 5 BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AL445363.3-201 | ENST00000623080 | 671 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AC019278.1-201 | ENST00000623516 | 479 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| MT1A | P04731 | AP003497.2-201 | ENST00000624220 | 967 nt | BASIC | 1.31 | □□□□□ -2.2 | | |