Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.43□□□□□ -1.7
LMX1BO60663 BX323845.1-201ENST00000432417 179 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC4.43□□□□□ -1.7
LMX1BO60663 TPT1P13-201ENST00000449760 499 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
LMX1BO60663 AC092155.2-201ENST00000454675 477 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 AL356981.1-201ENST00000454879 684 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 snoU13.20-201ENST00000459180 104 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 AC091180.1-201ENST00000462104 372 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 RPS3AP41-201ENST00000462701 778 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 AC009127.1-201ENST00000467090 155 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.43□□□□□ -1.7
LMX1BO60663 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.43□□□□□ -1.7
LMX1BO60663 AC004980.4-201ENST00000513375 203 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 AC012400.1-201ENST00000518452 381 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 AC105031.1-201ENST00000518550 476 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC4.43□□□□□ -1.7
LMX1BO60663 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC4.43□□□□□ -1.7
LMX1BO60663 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC4.43□□□□□ -1.7
LMX1BO60663 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.43□□□□□ -1.7
LMX1BO60663 AC007834.2-201ENST00000536310 343 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.43□□□□□ -1.7
LMX1BO60663 DUXAP6-201ENST00000553858 601 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 EDDM3DP-201ENST00000554692 434 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC4.43□□□□□ -1.7
LMX1BO60663 MYLK-221ENST00000583087 678 ntTSL 4 BASIC4.43□□□□□ -1.7
LMX1BO60663 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC4.43□□□□□ -1.7
LMX1BO60663 CCDC58P3-201ENST00000590792 430 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.43□□□□□ -1.7
LMX1BO60663 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC4.43□□□□□ -1.7
LMX1BO60663 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC4.43□□□□□ -1.7
LMX1BO60663 AC073387.2-201ENST00000604797 784 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 AC018695.5-201ENST00000605872 315 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 AC024060.1-201ENST00000607052 494 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC4.43□□□□□ -1.7
LMX1BO60663 AC245100.7-201ENST00000609678 442 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.43□□□□□ -1.7
LMX1BO60663 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
LMX1BO60663 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.43□□□□□ -1.7
LMX1BO60663 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC4.43□□□□□ -1.7
LMX1BO60663 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
LMX1BO60663 AC093849.1-201ENST00000563631 2209 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.43□□□□□ -1.7
LMX1BO60663 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC4.43□□□□□ -1.7
LMX1BO60663 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.43□□□□□ -1.7
LMX1BO60663 AC000374.1-201ENST00000434698 1745 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.43□□□□□ -1.7
LMX1BO60663 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 AC012618.3-205ENST00000637896 1496 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LMX1BO60663 AC132825.1-201ENST00000463573 2247 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LMX1BO60663 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.42□□□□□ -1.7
LMX1BO60663 AC010132.2-201ENST00000295493 1043 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
LMX1BO60663 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
LMX1BO60663 SNORA2.3-201ENST00000383920 135 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 SNORA51.8-201ENST00000384234 132 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 SNORD116-8-201ENST00000384365 95 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 CASP3-203ENST00000393588 677 ntTSL 4 BASIC4.42□□□□□ -1.7
LMX1BO60663 AL603865.2-201ENST00000401679 213 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 GSTA12P-201ENST00000402398 508 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 RNU4-22P-201ENST00000411058 166 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 AC016397.1-201ENST00000412463 242 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC4.42□□□□□ -1.7
LMX1BO60663 AC010099.3-201ENST00000423896 409 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 RPS4XP16-201ENST00000427198 791 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC4.42□□□□□ -1.7
LMX1BO60663 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.42□□□□□ -1.7
LMX1BO60663 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC4.42□□□□□ -1.7
LMX1BO60663 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC4.42□□□□□ -1.7
LMX1BO60663 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC4.42□□□□□ -1.7
LMX1BO60663 Z92846.1-201ENST00000456203 268 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
LMX1BO60663 DAP3-209ENST00000465375 729 ntTSL 2 BASIC4.42□□□□□ -1.7
LMX1BO60663 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC4.42□□□□□ -1.7
LMX1BO60663 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.42□□□□□ -1.7
LMX1BO60663 SYT14P1-201ENST00000481459 721 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC4.42□□□□□ -1.7
LMX1BO60663 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC4.42□□□□□ -1.7
LMX1BO60663 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC4.42□□□□□ -1.7
LMX1BO60663 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.42□□□□□ -1.7
LMX1BO60663 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.42□□□□□ -1.7
LMX1BO60663 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC4.42□□□□□ -1.7
LMX1BO60663 MTCO3P28-201ENST00000513351 515 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC4.42□□□□□ -1.7
LMX1BO60663 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC4.42□□□□□ -1.7
LMX1BO60663 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.42□□□□□ -1.7
LMX1BO60663 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC4.42□□□□□ -1.7
LMX1BO60663 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LMX1BO60663 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.42□□□□□ -1.7
LMX1BO60663 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
LMX1BO60663 GSTP1P1-201ENST00000548078 319 ntBASIC4.42□□□□□ -1.7
LMX1BO60663 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC4.42□□□□□ -1.7
LMX1BO60663 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC4.42□□□□□ -1.7
LMX1BO60663 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC4.42□□□□□ -1.7
LMX1BO60663 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC4.42□□□□□ -1.7
LMX1BO60663 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms