Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
VPS28Q9UK41 RN7SKP97-201ENST00000410966 333 ntBASIC5.13□□□□□ -1.59
VPS28Q9UK41 CHEK2P3-201ENST00000416118 248 ntBASIC5.13□□□□□ -1.59
VPS28Q9UK41 AC073310.1-201ENST00000423226 1033 ntBASIC5.13□□□□□ -1.59
VPS28Q9UK41 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 AC073069.1-201ENST00000428657 441 ntBASIC5.13□□□□□ -1.59
VPS28Q9UK41 DYNLL1P7-201ENST00000429273 258 ntBASIC5.13□□□□□ -1.59
VPS28Q9UK41 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 RPL35AP21-201ENST00000437667 333 ntBASIC5.13□□□□□ -1.59
VPS28Q9UK41 RPS29P9-201ENST00000440360 171 ntBASIC5.13□□□□□ -1.59
VPS28Q9UK41 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 AC016550.1-201ENST00000505348 785 ntBASIC5.13□□□□□ -1.59
VPS28Q9UK41 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.13□□□□□ -1.59
VPS28Q9UK41 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 AC012339.2-201ENST00000523996 453 ntBASIC5.13□□□□□ -1.59
VPS28Q9UK41 RGS5-219ENST00000528019 512 ntTSL 4 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 EDDM3DP-201ENST00000554692 434 ntBASIC5.13□□□□□ -1.59
VPS28Q9UK41 AL049830.4-201ENST00000555149 351 ntBASIC5.13□□□□□ -1.59
VPS28Q9UK41 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.13□□□□□ -1.59
VPS28Q9UK41 STMN1P1-201ENST00000617809 440 ntBASIC5.13□□□□□ -1.59
VPS28Q9UK41 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 AL445528.2-201ENST00000620582 470 ntBASIC5.13□□□□□ -1.59
VPS28Q9UK41 AC020978.9-201ENST00000624380 1141 ntBASIC5.13□□□□□ -1.59
VPS28Q9UK41 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 AC132825.7-201ENST00000638744 335 ntBASIC5.13□□□□□ -1.59
VPS28Q9UK41 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS28Q9UK41 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
VPS28Q9UK41 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS28Q9UK41 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS28Q9UK41 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 AC092162.3-201ENST00000624511 1624 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
VPS28Q9UK41 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
VPS28Q9UK41 AC114546.3-201ENST00000623582 1734 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
VPS28Q9UK41 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
VPS28Q9UK41 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 MIR1303-201ENST00000408625 86 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 AL445183.3-201ENST00000414168 502 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 AF186996.5-201ENST00000418098 904 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 OR2AM1P-201ENST00000422137 422 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 OR2AH1P-201ENST00000425717 928 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 RPL12P28-201ENST00000430852 489 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 TXNP5-201ENST00000441043 315 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 AL035407.2-201ENST00000454090 378 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 AL591473.1-201ENST00000464297 313 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 TRBV8-2-201ENST00000475637 270 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 RN7SL441P-201ENST00000492388 296 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 HMGN1P15-201ENST00000513870 295 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 AP003717.3-201ENST00000544832 1180 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 CSNK1A1P1-202ENST00000563423 981 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 MIR3934-201ENST00000579806 107 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 AC125494.3-201ENST00000602759 455 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 AC008536.1-201ENST00000602872 669 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 AC005377.1-201ENST00000605126 456 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 AC018695.5-201ENST00000605872 315 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 AC090948.2-201ENST00000607363 564 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 VN1R9P-201ENST00000614184 867 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 FRG1HP-204ENST00000617940 757 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 AC022106.2-201ENST00000620114 757 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 AC015871.5-202ENST00000623252 701 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
VPS28Q9UK41 AL353743.4-201ENST00000422653 1547 ntBASIC5.12□□□□□ -1.59
VPS28Q9UK41 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.11□□□□□ -1.59
VPS28Q9UK41 SEC63P2-201ENST00000503863 1939 ntBASIC5.11□□□□□ -1.59
VPS28Q9UK41 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
VPS28Q9UK41 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms