Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AL035090.1-201ENST00000454835 332 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 RN7SL826P-201ENST00000479724 288 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 RPL7P6-201ENST00000480903 738 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 RN7SL809P-201ENST00000482040 297 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 UBA52P7-201ENST00000486088 380 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 RN7SL30P-201ENST00000488416 306 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 RN7SL346P-201ENST00000491561 294 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 SNORA31.13-201ENST00000516624 135 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 MIR1269B-201ENST00000580405 75 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 RN7SL356P-201ENST00000582228 248 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AL353778.1-201ENST00000603149 408 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AC005377.1-201ENST00000605126 456 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AL360219.1-201ENST00000610230 366 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 AL121890.3-201ENST00000618494 516 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 NEAT1-202ENST00000501122 22743 ntBASIC5.44□□□□□ -1.54
DKK3Q9UBP4 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
DKK3Q9UBP4 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 C4BPAP1-201ENST00000415474 1893 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 AC104454.1-201ENST00000421341 1401 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 Y_RNA.169-201ENST00000363745 96 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 SNORD56.6-201ENST00000384569 71 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 AL356131.1-201ENST00000405826 414 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 DPPA2P3-201ENST00000411853 655 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 RPS7P9-201ENST00000414704 586 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 AL356320.2-201ENST00000417263 507 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 AC023128.2-201ENST00000420880 1223 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 FAM96AP1-201ENST00000430879 482 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 AL772161.1-201ENST00000439130 476 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 HSFY3P-201ENST00000444242 1191 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 ATG12P2-201ENST00000456830 416 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 MTND2P28-201ENST00000457540 1044 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 RN7SL329P-201ENST00000467740 299 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 AC126121.1-201ENST00000482313 553 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 AC093270.2-201ENST00000486157 792 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 RPS3AP22-201ENST00000488297 769 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 AC006499.3-201ENST00000506077 748 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 RNA5SP228-201ENST00000516232 133 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 MTCYBP19-201ENST00000517463 1124 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 CDC42P3-201ENST00000518493 633 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 AC013701.1-201ENST00000522657 465 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 OR10G5P-201ENST00000532733 358 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 AC090695.1-201ENST00000561269 1222 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 AC069366.1-201ENST00000583159 838 ntBASIC5.43□□□□□ -1.54
DKK3Q9UBP4 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC5.43□□□□□ -1.54
DKK3Q9UBP4 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms