Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AL135786.2-201ENST00000608422 615 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AC083809.1-201ENST00000615051 472 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AC006840.1-201ENST00000623069 542 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AL359715.4-201ENST00000606629 1436 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AL132640.2-201ENST00000559968 1698 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AC027228.2-201ENST00000567141 2154 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 OR4K15-201ENST00000305051 1216 ntBASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AL357515.1-201ENST00000402967 542 ntBASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 OR51A6P-201ENST00000418680 1004 ntBASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 BX119904.1-201ENST00000432026 348 ntBASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AC000111.2-201ENST00000448200 210 ntBASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 CEACAMP6-201ENST00000452007 574 ntBASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 SCARNA22-201ENST00000503991 125 ntBASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AC113192.3-201ENST00000529152 742 ntBASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AC009643.1-201ENST00000532030 391 ntBASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AC133555.2-201ENST00000550213 292 ntBASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AC025918.2-201ENST00000558683 763 ntBASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AC116553.2-201ENST00000564203 463 ntBASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AC022726.1-201ENST00000587475 207 ntBASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AC010424.2-201ENST00000607594 443 ntBASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 DHX40P1-201ENST00000588725 1412 ntBASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
CCDC3Q9BQI4 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 KARSP3-201ENST00000571212 1504 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 VDAC2P1-201ENST00000399358 958 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 OR6K4P-201ENST00000423179 955 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 FABP7P1-201ENST00000424004 391 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 UBE2D3P3-201ENST00000426992 425 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AL160175.1-201ENST00000428124 247 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 TCEA1P3-201ENST00000443005 880 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 ARL2BPP10-201ENST00000446487 531 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AL591623.2-201ENST00000449978 222 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AC021660.1-201ENST00000465006 554 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 RPS23P7-201ENST00000466210 444 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 MTHFD2P4-201ENST00000515074 1025 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 RNU2-30P-201ENST00000516209 141 ntBASIC4.68□□□□□ -1.66
CCDC3Q9BQI4 Y_RNA.719-201ENST00000517156 106 ntBASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms