Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.25□□□□□ -1.57
PTCHD3Q3KNS1 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 DDX18P4-201ENST00000511690 1966 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 NACA3P-201ENST00000359690 648 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 snoZ40.1-201ENST00000364540 72 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 SKINT1L-201ENST00000401057 817 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AC090960.1-201ENST00000421072 306 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AL365396.1-201ENST00000430854 671 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 RPL7P39-201ENST00000481157 744 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 RN7SL30P-201ENST00000488416 306 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AC024558.1-201ENST00000505008 528 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 HIGD1AP14-201ENST00000507617 282 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 HMGB1P44-201ENST00000508597 572 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 MRPS33P3-201ENST00000513456 322 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 RNU6-1129P-201ENST00000515964 104 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 C1GALT1P3-201ENST00000522049 819 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AP003461.1-201ENST00000528866 78 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AP004607.2-201ENST00000533949 322 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AC087465.1-201ENST00000560574 245 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 MIR3912-201ENST00000577566 105 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 PIGPP4-201ENST00000584447 307 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 Z99497.2-201ENST00000603634 310 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AC090525.3-201ENST00000605601 189 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AL512329.2-201ENST00000607350 548 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AL021707.7-201ENST00000607991 416 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 MIR7973-1-201ENST00000614683 76 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 AC087821.2-201ENST00000637086 450 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 SAMMSON-209ENST00000641222 1100 ntBASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
PTCHD3Q3KNS1 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 AC109780.1-201ENST00000451768 1344 ntBASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 AL133325.1-201ENST00000421090 382 ntBASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 AC234064.1-201ENST00000436312 247 ntBASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC5.23□□□□□ -1.57
PTCHD3Q3KNS1 AURKAPS1-201ENST00000451805 1212 ntBASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms