Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 SNORA11.2-201ENST00000408318 127 ntBASIC3.94□□□□□ -1.78
CHD3Q12873 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC3.94□□□□□ -1.78
CHD3Q12873 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC3.94□□□□□ -1.78
CHD3Q12873 VN1R34P-201ENST00000447387 883 ntBASIC3.94□□□□□ -1.78
CHD3Q12873 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC3.94□□□□□ -1.78
CHD3Q12873 ATP6V1G1P6-201ENST00000504007 334 ntBASIC3.94□□□□□ -1.78
CHD3Q12873 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CHD3Q12873 AC021146.3-201ENST00000511911 260 ntBASIC3.94□□□□□ -1.78
CHD3Q12873 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC3.94□□□□□ -1.78
CHD3Q12873 TRAV8-5-201ENST00000537369 341 ntBASIC3.94□□□□□ -1.78
CHD3Q12873 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC3.94□□□□□ -1.78
CHD3Q12873 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC3.94□□□□□ -1.78
CHD3Q12873 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC3.94□□□□□ -1.78
CHD3Q12873 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC3.94□□□□□ -1.78
CHD3Q12873 AL031119.1-201ENST00000404707 1879 ntBASIC3.93□□□□□ -1.78
CHD3Q12873 AC093775.1-201ENST00000624154 1868 ntBASIC3.93□□□□□ -1.78
CHD3Q12873 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CHD3Q12873 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC3.93□□□□□ -1.78
CHD3Q12873 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC3.93□□□□□ -1.78
CHD3Q12873 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC3.93□□□□□ -1.78
CHD3Q12873 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC3.93□□□□□ -1.78
CHD3Q12873 AL133268.1-201ENST00000405676 1401 ntBASIC3.93□□□□□ -1.78
CHD3Q12873 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CHD3Q12873 AC105074.1-201ENST00000623380 3095 ntBASIC3.93□□□□□ -1.78
CHD3Q12873 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CHD3Q12873 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.93□□□□□ -1.78
CHD3Q12873 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CHD3Q12873 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
CHD3Q12873 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
CHD3Q12873 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC3.93□□□□□ -1.78
CHD3Q12873 RN7SKP224-201ENST00000364140 325 ntBASIC3.93□□□□□ -1.78
CHD3Q12873 SNORD96B-201ENST00000386148 79 ntBASIC3.93□□□□□ -1.78
CHD3Q12873 RNA5SP397-201ENST00000391323 118 ntBASIC3.93□□□□□ -1.78
CHD3Q12873 TEX41-203ENST00000420472 765 ntTSL 3 BASIC3.93□□□□□ -1.78
CHD3Q12873 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC3.93□□□□□ -1.78
CHD3Q12873 UQCRBP1-201ENST00000421129 336 ntBASIC3.93□□□□□ -1.78
CHD3Q12873 GAS5-208ENST00000425771 242 ntTSL 3 BASIC3.93□□□□□ -1.78
CHD3Q12873 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC3.93□□□□□ -1.78
CHD3Q12873 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC3.93□□□□□ -1.78
CHD3Q12873 FHP1-201ENST00000442741 703 ntBASIC3.93□□□□□ -1.78
CHD3Q12873 AL591363.1-201ENST00000450091 483 ntBASIC3.93□□□□□ -1.78
CHD3Q12873 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC3.93□□□□□ -1.78
CHD3Q12873 SCARNA10-201ENST00000459255 330 ntBASIC3.93□□□□□ -1.78
CHD3Q12873 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.93□□□□□ -1.78
CHD3Q12873 AC091868.1-201ENST00000508746 304 ntBASIC3.93□□□□□ -1.78
CHD3Q12873 SNORA31.9-201ENST00000516429 84 ntBASIC3.93□□□□□ -1.78
CHD3Q12873 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC3.93□□□□□ -1.78
CHD3Q12873 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC3.93□□□□□ -1.78
CHD3Q12873 AC068831.4-201ENST00000556118 109 ntBASIC3.93□□□□□ -1.78
CHD3Q12873 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC3.93□□□□□ -1.78
CHD3Q12873 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC3.93□□□□□ -1.78
CHD3Q12873 MIR492-201ENST00000638676 116 ntBASIC3.93□□□□□ -1.78
CHD3Q12873 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
CHD3Q12873 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
CHD3Q12873 AL136164.3-201ENST00000624429 3978 ntBASIC3.93□□□□□ -1.78
CHD3Q12873 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CHD3Q12873 AC125257.1-201ENST00000560400 2930 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
CHD3Q12873 RNU1-94P-201ENST00000362627 173 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
CHD3Q12873 RPL21P43-201ENST00000425440 472 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 ACTR3P2-201ENST00000439585 1257 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC3.92□□□□□ -1.78
CHD3Q12873 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC3.92□□□□□ -1.78
CHD3Q12873 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC3.92□□□□□ -1.78
CHD3Q12873 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
CHD3Q12873 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC3.92□□□□□ -1.78
CHD3Q12873 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
CHD3Q12873 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC3.92□□□□□ -1.78
CHD3Q12873 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC3.92□□□□□ -1.78
CHD3Q12873 DDX18P3-201ENST00000404856 2007 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CHD3Q12873 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC3.92□□□□□ -1.78
CHD3Q12873 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CHD3Q12873 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
CHD3Q12873 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC3.92□□□□□ -1.78
CHD3Q12873 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
CHD3Q12873 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.92□□□□□ -1.78
CHD3Q12873 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC3.92□□□□□ -1.78
CHD3Q12873 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CHD3Q12873 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC3.92□□□□□ -1.78
CHD3Q12873 AC005261.4-201ENST00000600047 1385 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CHD3Q12873 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
CHD3Q12873 RNU1-20P-201ENST00000363314 162 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 SNORA71.2-201ENST00000364941 134 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 RNU1-63P-201ENST00000383902 164 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 MIR659-201ENST00000384963 97 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 SNORA11C-201ENST00000408532 129 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 RN7SKP167-201ENST00000411047 285 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CHD3Q12873 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC3.92□□□□□ -1.78
CHD3Q12873 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC3.92□□□□□ -1.78
CHD3Q12873 RPL23AP93-201ENST00000440847 484 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC3.92□□□□□ -1.78
CHD3Q12873 AL445433.1-201ENST00000457507 257 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 AC010469.1-201ENST00000463864 576 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC3.92□□□□□ -1.78
CHD3Q12873 SAP18P1-201ENST00000512058 390 ntBASIC3.92□□□□□ -1.78
CHD3Q12873 Y_RNA.719-201ENST00000517156 106 ntBASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms