Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC5.92□□□□□ -1.46
RNF4P78317 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC5.92□□□□□ -1.46
RNF4P78317 TIMM8BP2-201ENST00000445940 251 ntBASIC5.92□□□□□ -1.46
RNF4P78317 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC5.92□□□□□ -1.46
RNF4P78317 VN1R38P-201ENST00000450265 887 ntBASIC5.92□□□□□ -1.46
RNF4P78317 OFD1P4Y-201ENST00000455273 1179 ntBASIC5.92□□□□□ -1.46
RNF4P78317 RN7SL552P-201ENST00000462094 276 ntBASIC5.92□□□□□ -1.46
RNF4P78317 RN7SL643P-201ENST00000471845 291 ntBASIC5.92□□□□□ -1.46
RNF4P78317 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
RNF4P78317 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC5.92□□□□□ -1.46
RNF4P78317 AC106822.1-201ENST00000502647 526 ntBASIC5.92□□□□□ -1.46
RNF4P78317 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC5.92□□□□□ -1.46
RNF4P78317 AC093815.1-201ENST00000508637 280 ntBASIC5.92□□□□□ -1.46
RNF4P78317 RNA5SP216-201ENST00000516111 123 ntBASIC5.92□□□□□ -1.46
RNF4P78317 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC5.92□□□□□ -1.46
RNF4P78317 MTCO2P4-201ENST00000517968 247 ntBASIC5.92□□□□□ -1.46
RNF4P78317 ODF1-202ENST00000518835 368 ntTSL 3 BASIC5.92□□□□□ -1.46
RNF4P78317 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC5.92□□□□□ -1.46
RNF4P78317 IGHV4-55-201ENST00000520889 368 ntBASIC5.92□□□□□ -1.46
RNF4P78317 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.92□□□□□ -1.46
RNF4P78317 RPL27A-211ENST00000532359 406 ntTSL 2 BASIC5.92□□□□□ -1.46
RNF4P78317 AK6P1-201ENST00000540219 478 ntBASIC5.92□□□□□ -1.46
RNF4P78317 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC5.92□□□□□ -1.46
RNF4P78317 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC5.92□□□□□ -1.46
RNF4P78317 CENPUP2-201ENST00000555897 1186 ntBASIC5.92□□□□□ -1.46
RNF4P78317 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC5.92□□□□□ -1.46
RNF4P78317 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC5.92□□□□□ -1.46
RNF4P78317 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.92□□□□□ -1.46
RNF4P78317 AL359091.2-201ENST00000609303 556 ntBASIC5.92□□□□□ -1.46
RNF4P78317 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC5.92□□□□□ -1.46
RNF4P78317 AC002553.4-201ENST00000616896 331 ntBASIC5.92□□□□□ -1.46
RNF4P78317 AC108479.2-201ENST00000617314 601 ntBASIC5.92□□□□□ -1.46
RNF4P78317 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.92□□□□□ -1.46
RNF4P78317 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC5.92□□□□□ -1.46
RNF4P78317 AC012150.2-201ENST00000621300 544 ntBASIC5.92□□□□□ -1.46
RNF4P78317 AL359880.1-201ENST00000621879 266 ntBASIC5.92□□□□□ -1.46
RNF4P78317 AC068880.5-201ENST00000624331 290 ntBASIC5.92□□□□□ -1.46
RNF4P78317 AC026634.1-201ENST00000634369 198 ntBASIC5.92□□□□□ -1.46
RNF4P78317 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
RNF4P78317 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC5.92□□□□□ -1.46
RNF4P78317 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
RNF4P78317 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
RNF4P78317 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
RNF4P78317 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC5.92□□□□□ -1.46
RNF4P78317 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC5.92□□□□□ -1.46
RNF4P78317 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC5.92□□□□□ -1.46
RNF4P78317 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
RNF4P78317 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
RNF4P78317 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC5.91□□□□□ -1.46
RNF4P78317 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC5.91□□□□□ -1.46
RNF4P78317 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5.91□□□□□ -1.46
RNF4P78317 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC5.91□□□□□ -1.46
RNF4P78317 AC112243.1-201ENST00000623949 3851 ntBASIC5.91□□□□□ -1.46
RNF4P78317 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
RNF4P78317 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
RNF4P78317 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
RNF4P78317 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
RNF4P78317 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC5.91□□□□□ -1.46
RNF4P78317 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
RNF4P78317 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC5.91□□□□□ -1.46
RNF4P78317 VN1R8P-201ENST00000407739 893 ntBASIC5.91□□□□□ -1.46
RNF4P78317 RBMY2KP-201ENST00000418221 992 ntBASIC5.91□□□□□ -1.46
RNF4P78317 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC5.91□□□□□ -1.46
RNF4P78317 AC012498.1-201ENST00000424037 437 ntBASIC5.91□□□□□ -1.46
RNF4P78317 AL158073.1-201ENST00000426848 1104 ntBASIC5.91□□□□□ -1.46
RNF4P78317 MTND1P14-201ENST00000427400 950 ntBASIC5.91□□□□□ -1.46
RNF4P78317 AC073069.1-201ENST00000428657 441 ntBASIC5.91□□□□□ -1.46
RNF4P78317 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC5.91□□□□□ -1.46
RNF4P78317 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC5.91□□□□□ -1.46
RNF4P78317 AL358934.1-201ENST00000432346 324 ntBASIC5.91□□□□□ -1.46
RNF4P78317 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.91□□□□□ -1.46
RNF4P78317 POU5F1P5-201ENST00000445059 658 ntBASIC5.91□□□□□ -1.46
RNF4P78317 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC5.91□□□□□ -1.46
RNF4P78317 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC5.91□□□□□ -1.46
RNF4P78317 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC5.91□□□□□ -1.46
RNF4P78317 MEMO1P3-201ENST00000459811 302 ntBASIC5.91□□□□□ -1.46
RNF4P78317 SNRPCP3-201ENST00000474888 476 ntBASIC5.91□□□□□ -1.46
RNF4P78317 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC5.91□□□□□ -1.46
RNF4P78317 OR5H5P-201ENST00000503164 928 ntBASIC5.91□□□□□ -1.46
RNF4P78317 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC5.91□□□□□ -1.46
RNF4P78317 AC021678.1-201ENST00000505195 936 ntBASIC5.91□□□□□ -1.46
RNF4P78317 AC113367.2-201ENST00000505749 160 ntBASIC5.91□□□□□ -1.46
RNF4P78317 AC025674.1-201ENST00000507074 324 ntBASIC5.91□□□□□ -1.46
RNF4P78317 IMPA1P1-201ENST00000510718 842 ntBASIC5.91□□□□□ -1.46
RNF4P78317 AC108471.1-201ENST00000513977 287 ntBASIC5.91□□□□□ -1.46
RNF4P78317 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC5.91□□□□□ -1.46
RNF4P78317 COX6B1P4-201ENST00000519826 484 ntBASIC5.91□□□□□ -1.46
RNF4P78317 IGKV2-36-201ENST00000519999 223 ntBASIC5.91□□□□□ -1.46
RNF4P78317 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.91□□□□□ -1.46
RNF4P78317 OR5AQ1P-201ENST00000527596 927 ntBASIC5.91□□□□□ -1.46
RNF4P78317 RGS4-207ENST00000527809 817 ntTSL 4 BASIC5.91□□□□□ -1.46
RNF4P78317 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.91□□□□□ -1.46
RNF4P78317 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC5.91□□□□□ -1.46
RNF4P78317 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC5.91□□□□□ -1.46
RNF4P78317 C8orf59P2-201ENST00000603441 271 ntBASIC5.91□□□□□ -1.46
RNF4P78317 BNIP3P9-201ENST00000603714 553 ntBASIC5.91□□□□□ -1.46
RNF4P78317 AL390208.1-201ENST00000605885 644 ntBASIC5.91□□□□□ -1.46
RNF4P78317 AC104010.1-201ENST00000616889 150 ntBASIC5.91□□□□□ -1.46
RNF4P78317 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.91□□□□□ -1.46
RNF4P78317 AC093648.1-201ENST00000623546 606 ntBASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms