Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 COX6B1P7-201ENST00000430845 235 ntBASIC5.05□□□□□ -1.6
HMGCS2P54868 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC5.05□□□□□ -1.6
HMGCS2P54868 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.05□□□□□ -1.6
HMGCS2P54868 RPL35AP15-201ENST00000468042 339 ntBASIC5.05□□□□□ -1.6
HMGCS2P54868 PPM1AP1-201ENST00000502740 1135 ntBASIC5.05□□□□□ -1.6
HMGCS2P54868 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC5.05□□□□□ -1.6
HMGCS2P54868 AC026782.2-201ENST00000510845 636 ntBASIC5.05□□□□□ -1.6
HMGCS2P54868 AC108064.1-201ENST00000513791 460 ntBASIC5.05□□□□□ -1.6
HMGCS2P54868 RFPL4AP3-201ENST00000515267 345 ntBASIC5.05□□□□□ -1.6
HMGCS2P54868 RNU6-943P-201ENST00000516960 98 ntBASIC5.05□□□□□ -1.6
HMGCS2P54868 RNA5SP230-201ENST00000517039 122 ntBASIC5.05□□□□□ -1.6
HMGCS2P54868 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HMGCS2P54868 AC010615.3-201ENST00000597319 394 ntBASIC5.05□□□□□ -1.6
HMGCS2P54868 AC090953.1-201ENST00000604305 1092 ntBASIC5.05□□□□□ -1.6
HMGCS2P54868 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC5.05□□□□□ -1.6
HMGCS2P54868 AL021997.2-201ENST00000615674 271 ntBASIC5.05□□□□□ -1.6
HMGCS2P54868 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HMGCS2P54868 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC5.05□□□□□ -1.6
HMGCS2P54868 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HMGCS2P54868 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC5.05□□□□□ -1.6
HMGCS2P54868 AP001284.1-201ENST00000528393 2118 ntBASIC5.05□□□□□ -1.6
HMGCS2P54868 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HMGCS2P54868 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
HMGCS2P54868 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HMGCS2P54868 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HMGCS2P54868 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
HMGCS2P54868 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
HMGCS2P54868 RNU1-14P-201ENST00000362759 152 ntBASIC5.04□□□□□ -1.6
HMGCS2P54868 RNU1-83P-201ENST00000363426 164 ntBASIC5.04□□□□□ -1.6
HMGCS2P54868 RNA5SP130-201ENST00000364431 114 ntBASIC5.04□□□□□ -1.6
HMGCS2P54868 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC5.04□□□□□ -1.6
HMGCS2P54868 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC5.04□□□□□ -1.6
HMGCS2P54868 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HMGCS2P54868 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.04□□□□□ -1.6
HMGCS2P54868 RN7SKP33-201ENST00000410942 340 ntBASIC5.04□□□□□ -1.6
HMGCS2P54868 Z74021.1-201ENST00000423610 407 ntBASIC5.04□□□□□ -1.6
HMGCS2P54868 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC5.04□□□□□ -1.6
HMGCS2P54868 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC5.04□□□□□ -1.6
HMGCS2P54868 AL512326.1-201ENST00000443050 721 ntBASIC5.04□□□□□ -1.6
HMGCS2P54868 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC5.04□□□□□ -1.6
HMGCS2P54868 AL162151.2-201ENST00000448875 158 ntBASIC5.04□□□□□ -1.6
HMGCS2P54868 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC5.04□□□□□ -1.6
HMGCS2P54868 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC5.04□□□□□ -1.6
HMGCS2P54868 MTND4LP31-201ENST00000514859 294 ntBASIC5.04□□□□□ -1.6
HMGCS2P54868 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC5.04□□□□□ -1.6
HMGCS2P54868 AC023632.4-201ENST00000517783 191 ntBASIC5.04□□□□□ -1.6
HMGCS2P54868 MTCO1P49-201ENST00000523429 802 ntBASIC5.04□□□□□ -1.6
HMGCS2P54868 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HMGCS2P54868 AC105233.3-201ENST00000531125 744 ntBASIC5.04□□□□□ -1.6
HMGCS2P54868 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.04□□□□□ -1.6
HMGCS2P54868 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC5.04□□□□□ -1.6
HMGCS2P54868 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HMGCS2P54868 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC5.04□□□□□ -1.6
HMGCS2P54868 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.04□□□□□ -1.6
HMGCS2P54868 AL713998.2-201ENST00000604538 1198 ntBASIC5.04□□□□□ -1.6
HMGCS2P54868 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
HMGCS2P54868 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HMGCS2P54868 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HMGCS2P54868 AL513548.1-201ENST00000562904 1724 ntBASIC5.03□□□□□ -1.6
HMGCS2P54868 AC233968.1-201ENST00000611212 1300 ntBASIC5.03□□□□□ -1.6
HMGCS2P54868 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
HMGCS2P54868 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
HMGCS2P54868 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HMGCS2P54868 AC104260.2-201ENST00000623551 3497 ntBASIC5.03□□□□□ -1.6
HMGCS2P54868 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HMGCS2P54868 RNA5SP175-201ENST00000364275 119 ntBASIC5.03□□□□□ -1.6
HMGCS2P54868 RNA5SP187-201ENST00000384400 119 ntBASIC5.03□□□□□ -1.6
HMGCS2P54868 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC5.03□□□□□ -1.6
HMGCS2P54868 AC240504.1-201ENST00000395709 845 ntBASIC5.03□□□□□ -1.6
HMGCS2P54868 MTND4LP21-201ENST00000415303 295 ntBASIC5.03□□□□□ -1.6
HMGCS2P54868 AL590806.1-201ENST00000415818 853 ntBASIC5.03□□□□□ -1.6
HMGCS2P54868 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
HMGCS2P54868 RPL21P91-201ENST00000429231 479 ntBASIC5.03□□□□□ -1.6
HMGCS2P54868 MRPL50P1-201ENST00000431951 384 ntBASIC5.03□□□□□ -1.6
HMGCS2P54868 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC5.03□□□□□ -1.6
HMGCS2P54868 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC5.03□□□□□ -1.6
HMGCS2P54868 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HMGCS2P54868 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.03□□□□□ -1.6
HMGCS2P54868 AP002371.1-201ENST00000463604 433 ntBASIC5.03□□□□□ -1.6
HMGCS2P54868 RN7SL542P-201ENST00000467147 294 ntBASIC5.03□□□□□ -1.6
HMGCS2P54868 AP000926.3-201ENST00000497201 299 ntBASIC5.03□□□□□ -1.6
HMGCS2P54868 AC010374.1-201ENST00000503762 1237 ntBASIC5.03□□□□□ -1.6
HMGCS2P54868 AC098799.1-201ENST00000504752 800 ntBASIC5.03□□□□□ -1.6
HMGCS2P54868 KCTD9P2-201ENST00000512203 1013 ntBASIC5.03□□□□□ -1.6
HMGCS2P54868 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HMGCS2P54868 BNIP3P22-201ENST00000593399 556 ntBASIC5.03□□□□□ -1.6
HMGCS2P54868 QTRT1P1-201ENST00000604344 1078 ntBASIC5.03□□□□□ -1.6
HMGCS2P54868 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC5.03□□□□□ -1.6
HMGCS2P54868 AL356863.1-201ENST00000623378 1080 ntBASIC5.03□□□□□ -1.6
HMGCS2P54868 AP003400.2-201ENST00000624036 666 ntBASIC5.03□□□□□ -1.6
HMGCS2P54868 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC5.03□□□□□ -1.6
HMGCS2P54868 AL672167.1-205ENST00000641112 3080 ntBASIC5.03□□□□□ -1.6
HMGCS2P54868 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
HMGCS2P54868 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
HMGCS2P54868 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
HMGCS2P54868 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
HMGCS2P54868 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
HMGCS2P54868 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
HMGCS2P54868 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
HMGCS2P54868 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 125.4 ms