Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
CXCL12P48061 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CXCL12P48061 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.4□□□□□ -1.71
CXCL12P48061 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
CXCL12P48061 TRAV35-201ENST00000390462 330 ntBASIC4.4□□□□□ -1.71
CXCL12P48061 RNU6ATAC-201ENST00000408749 126 ntBASIC4.4□□□□□ -1.71
CXCL12P48061 AL590806.1-201ENST00000415818 853 ntBASIC4.4□□□□□ -1.71
CXCL12P48061 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.4□□□□□ -1.71
CXCL12P48061 AL136231.1-201ENST00000429407 730 ntBASIC4.4□□□□□ -1.71
CXCL12P48061 COX6B1P7-201ENST00000430845 235 ntBASIC4.4□□□□□ -1.71
CXCL12P48061 AC114495.1-201ENST00000441274 436 ntBASIC4.4□□□□□ -1.71
CXCL12P48061 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC4.4□□□□□ -1.71
CXCL12P48061 EIF4A2P2-201ENST00000455776 1070 ntBASIC4.4□□□□□ -1.71
CXCL12P48061 AC091564.1-201ENST00000464563 479 ntBASIC4.4□□□□□ -1.71
CXCL12P48061 RPL7L1P8-201ENST00000469911 741 ntBASIC4.4□□□□□ -1.71
CXCL12P48061 TPT1P3-201ENST00000492841 512 ntBASIC4.4□□□□□ -1.71
CXCL12P48061 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.4□□□□□ -1.71
CXCL12P48061 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC4.4□□□□□ -1.71
CXCL12P48061 RNA5SP249-201ENST00000516127 99 ntBASIC4.4□□□□□ -1.71
CXCL12P48061 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CXCL12P48061 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.4□□□□□ -1.71
CXCL12P48061 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC4.4□□□□□ -1.71
CXCL12P48061 MIR3944-201ENST00000581277 108 ntBASIC4.4□□□□□ -1.71
CXCL12P48061 AC008739.3-201ENST00000603262 127 ntBASIC4.4□□□□□ -1.71
CXCL12P48061 AL161729.3-201ENST00000603533 673 ntBASIC4.4□□□□□ -1.71
CXCL12P48061 AL451086.1-201ENST00000605596 223 ntBASIC4.4□□□□□ -1.71
CXCL12P48061 AC099669.2-201ENST00000616549 437 ntBASIC4.4□□□□□ -1.71
CXCL12P48061 AC007546.1-201ENST00000619452 559 ntBASIC4.4□□□□□ -1.71
CXCL12P48061 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
CXCL12P48061 AC004777.1-201ENST00000624317 287 ntBASIC4.4□□□□□ -1.71
CXCL12P48061 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.4□□□□□ -1.71
CXCL12P48061 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.4□□□□□ -1.71
CXCL12P48061 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CXCL12P48061 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CXCL12P48061 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.71
CXCL12P48061 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
CXCL12P48061 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
CXCL12P48061 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
CXCL12P48061 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.39□□□□□ -1.71
CXCL12P48061 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
CXCL12P48061 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
CXCL12P48061 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
CXCL12P48061 RNA5SP130-201ENST00000364431 114 ntBASIC4.39□□□□□ -1.71
CXCL12P48061 AL672167.2-201ENST00000377164 879 ntBASIC4.39□□□□□ -1.71
CXCL12P48061 RPL17P50-201ENST00000396131 546 ntBASIC4.39□□□□□ -1.71
CXCL12P48061 RPL21P65-201ENST00000406094 466 ntBASIC4.39□□□□□ -1.71
CXCL12P48061 FCF1P5-201ENST00000406490 482 ntBASIC4.39□□□□□ -1.71
CXCL12P48061 RN7SKP33-201ENST00000410942 340 ntBASIC4.39□□□□□ -1.71
CXCL12P48061 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.39□□□□□ -1.71
CXCL12P48061 MFSD13B-201ENST00000420133 1290 ntBASIC4.39□□□□□ -1.71
CXCL12P48061 ARAFP1-201ENST00000422172 605 ntBASIC4.39□□□□□ -1.71
CXCL12P48061 HNRNPA1P29-201ENST00000426409 879 ntBASIC4.39□□□□□ -1.71
CXCL12P48061 HMGN2P27-201ENST00000427352 270 ntBASIC4.39□□□□□ -1.71
CXCL12P48061 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.39□□□□□ -1.71
CXCL12P48061 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC4.39□□□□□ -1.71
CXCL12P48061 AC245028.2-201ENST00000458673 253 ntBASIC4.39□□□□□ -1.71
CXCL12P48061 AC090686.1-201ENST00000481577 749 ntBASIC4.39□□□□□ -1.71
CXCL12P48061 VN1R105P-201ENST00000486595 910 ntBASIC4.39□□□□□ -1.71
CXCL12P48061 AC010374.1-201ENST00000503762 1237 ntBASIC4.39□□□□□ -1.71
CXCL12P48061 AC010460.1-201ENST00000507087 466 ntBASIC4.39□□□□□ -1.71
CXCL12P48061 ATP1B1P1-201ENST00000509767 915 ntBASIC4.39□□□□□ -1.71
CXCL12P48061 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.39□□□□□ -1.71
CXCL12P48061 HNRNPRP2-201ENST00000528421 743 ntBASIC4.39□□□□□ -1.71
CXCL12P48061 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
CXCL12P48061 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC4.39□□□□□ -1.71
CXCL12P48061 AC090286.3-201ENST00000573133 187 ntBASIC4.39□□□□□ -1.71
CXCL12P48061 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC4.39□□□□□ -1.71
CXCL12P48061 AC127024.5-201ENST00000580085 462 ntBASIC4.39□□□□□ -1.71
CXCL12P48061 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CXCL12P48061 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.39□□□□□ -1.71
CXCL12P48061 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CXCL12P48061 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CXCL12P48061 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
CXCL12P48061 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CXCL12P48061 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
CXCL12P48061 RLIMP1-201ENST00000339626 1680 ntBASIC4.38□□□□□ -1.71
CXCL12P48061 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
CXCL12P48061 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.38□□□□□ -1.71
CXCL12P48061 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
CXCL12P48061 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.38□□□□□ -1.71
CXCL12P48061 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CXCL12P48061 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
CXCL12P48061 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CXCL12P48061 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
CXCL12P48061 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.38□□□□□ -1.71
CXCL12P48061 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CXCL12P48061 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CXCL12P48061 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CXCL12P48061 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.38□□□□□ -1.71
CXCL12P48061 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
CXCL12P48061 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.38□□□□□ -1.71
CXCL12P48061 RNA5SP175-201ENST00000364275 119 ntBASIC4.38□□□□□ -1.71
CXCL12P48061 ADAM24P-201ENST00000398655 2101 ntBASIC4.38□□□□□ -1.71
CXCL12P48061 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC4.38□□□□□ -1.71
CXCL12P48061 AC079809.1-201ENST00000415468 276 ntBASIC4.38□□□□□ -1.71
CXCL12P48061 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.38□□□□□ -1.71
CXCL12P48061 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.38□□□□□ -1.71
CXCL12P48061 RPS29P7-201ENST00000439662 171 ntBASIC4.38□□□□□ -1.71
CXCL12P48061 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.38□□□□□ -1.71
CXCL12P48061 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms