Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MIR5684-201ENST00000585074 65 ntBASIC7.04□□□□□ -1.28
CUX1P39880 AC114878.2-201ENST00000604863 1251 ntBASIC7.04□□□□□ -1.28
CUX1P39880 AC234782.5-201ENST00000617723 324 ntBASIC7.04□□□□□ -1.28
CUX1P39880 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CUX1P39880 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
CUX1P39880 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
CUX1P39880 LYST-202ENST00000389794 12985 ntTSL 5 BASIC7.03□□□□□ -1.28
CUX1P39880 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
CUX1P39880 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC7.03□□□□□ -1.28
CUX1P39880 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
CUX1P39880 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC7.03□□□□□ -1.28
CUX1P39880 DSTNP2-201ENST00000504533 515 ntBASIC7.03□□□□□ -1.28
CUX1P39880 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC7.03□□□□□ -1.28
CUX1P39880 RN7SKP157-201ENST00000516174 282 ntBASIC7.03□□□□□ -1.28
CUX1P39880 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC7.03□□□□□ -1.28
CUX1P39880 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC7.03□□□□□ -1.28
CUX1P39880 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC7.03□□□□□ -1.28
CUX1P39880 CA1-225ENST00000626824 2405 ntTSL 5 BASIC7.03□□□□□ -1.28
CUX1P39880 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
CUX1P39880 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC7.03□□□□□ -1.28
CUX1P39880 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
CUX1P39880 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
CUX1P39880 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC7.03□□□□□ -1.28
CUX1P39880 PHACTR2P1-201ENST00000605639 1414 ntBASIC7.02□□□□□ -1.28
CUX1P39880 RNA5SP372-201ENST00000390836 115 ntBASIC7.02□□□□□ -1.29
CUX1P39880 RPS21P8-201ENST00000413365 247 ntBASIC7.02□□□□□ -1.29
CUX1P39880 AC006011.1-201ENST00000442758 349 ntBASIC7.02□□□□□ -1.29
CUX1P39880 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC7.02□□□□□ -1.29
CUX1P39880 RPS4XP15-201ENST00000489210 795 ntBASIC7.02□□□□□ -1.29
CUX1P39880 RNA5SP303-201ENST00000516192 130 ntBASIC7.02□□□□□ -1.29
CUX1P39880 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC7.02□□□□□ -1.29
CUX1P39880 YPEL5P3-201ENST00000547227 352 ntBASIC7.02□□□□□ -1.29
CUX1P39880 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC7.02□□□□□ -1.29
CUX1P39880 AC090312.1-201ENST00000580637 348 ntBASIC7.02□□□□□ -1.29
CUX1P39880 RN7SL435P-201ENST00000584418 282 ntBASIC7.02□□□□□ -1.29
CUX1P39880 AC017100.2-201ENST00000584628 355 ntBASIC7.02□□□□□ -1.29
CUX1P39880 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC7.02□□□□□ -1.29
CUX1P39880 AL353726.1-201ENST00000614041 1000 ntBASIC7.02□□□□□ -1.29
CUX1P39880 AL354798.1-201ENST00000622505 329 ntBASIC7.02□□□□□ -1.29
CUX1P39880 AC009093.8-201ENST00000641769 292 ntBASIC7.02□□□□□ -1.29
CUX1P39880 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
CUX1P39880 DMD-211ENST00000378707 7410 ntTSL 5 BASIC7.02□□□□□ -1.29
CUX1P39880 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC7.02□□□□□ -1.29
CUX1P39880 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
CUX1P39880 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC7.02□□□□□ -1.29
CUX1P39880 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC7.02□□□□□ -1.29
CUX1P39880 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
CUX1P39880 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC7.02□□□□□ -1.29
CUX1P39880 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC7.02□□□□□ -1.29
CUX1P39880 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC7.02□□□□□ -1.29
CUX1P39880 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC7.02□□□□□ -1.29
CUX1P39880 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC7.02□□□□□ -1.29
CUX1P39880 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
CUX1P39880 AL450992.3-201ENST00000413192 568 ntBASIC7.01□□□□□ -1.29
CUX1P39880 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC7.01□□□□□ -1.29
CUX1P39880 RPS11P1-201ENST00000451072 473 ntBASIC7.01□□□□□ -1.29
CUX1P39880 ANK3-207ENST00000460468 677 ntTSL 3 BASIC7.01□□□□□ -1.29
CUX1P39880 RPS29P19-201ENST00000479709 171 ntBASIC7.01□□□□□ -1.29
CUX1P39880 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC7.01□□□□□ -1.29
CUX1P39880 HMGB3P16-201ENST00000508037 287 ntBASIC7.01□□□□□ -1.29
CUX1P39880 OSBPL9P2-201ENST00000526582 1228 ntBASIC7.01□□□□□ -1.29
CUX1P39880 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC7.01□□□□□ -1.29
CUX1P39880 MIR3944-201ENST00000581277 108 ntBASIC7.01□□□□□ -1.29
CUX1P39880 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
CUX1P39880 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
CUX1P39880 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC7.01□□□□□ -1.29
CUX1P39880 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC7.01□□□□□ -1.29
CUX1P39880 AL022393.1-201ENST00000625142 1677 ntBASIC7.01□□□□□ -1.29
CUX1P39880 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC7.01□□□□□ -1.29
CUX1P39880 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC7.01□□□□□ -1.29
CUX1P39880 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC7.01□□□□□ -1.29
CUX1P39880 AC090013.1-201ENST00000485147 480 ntBASIC7.01□□□□□ -1.29
CUX1P39880 KRT19P6-201ENST00000510983 209 ntBASIC7.01□□□□□ -1.29
CUX1P39880 HMGB2P1-201ENST00000591146 634 ntBASIC7.01□□□□□ -1.29
CUX1P39880 AL606490.9-201ENST00000603331 271 ntBASIC7.01□□□□□ -1.29
CUX1P39880 AL592436.1-201ENST00000605135 558 ntBASIC7.01□□□□□ -1.29
CUX1P39880 AC020978.9-201ENST00000624380 1141 ntBASIC7.01□□□□□ -1.29
CUX1P39880 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC7.01□□□□□ -1.29
CUX1P39880 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC7□□□□□ -1.29
CUX1P39880 VPS35P1-201ENST00000563400 1518 ntBASIC7□□□□□ -1.29
CUX1P39880 AP000473.2-201ENST00000602659 1537 ntBASIC7□□□□□ -1.29
CUX1P39880 CCAT2-201ENST00000630920 1752 ntBASIC7□□□□□ -1.29
CUX1P39880 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC7□□□□□ -1.29
CUX1P39880 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC7□□□□□ -1.29
CUX1P39880 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC7□□□□□ -1.29
CUX1P39880 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC7□□□□□ -1.29
CUX1P39880 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC7□□□□□ -1.29
CUX1P39880 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC7□□□□□ -1.29
CUX1P39880 RPS4XP4-201ENST00000443195 763 ntBASIC7□□□□□ -1.29
CUX1P39880 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC7□□□□□ -1.29
CUX1P39880 AC110792.1-201ENST00000491826 472 ntBASIC7□□□□□ -1.29
CUX1P39880 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC7□□□□□ -1.29
CUX1P39880 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC7□□□□□ -1.29
CUX1P39880 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC7□□□□□ -1.29
CUX1P39880 FP236240.3-201ENST00000623061 327 ntBASIC7□□□□□ -1.29
CUX1P39880 AC015908.5-201ENST00000623289 343 ntBASIC7□□□□□ -1.29
CUX1P39880 AC005261.2-201ENST00000593427 4258 ntBASIC7□□□□□ -1.29
CUX1P39880 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC7□□□□□ -1.29
CUX1P39880 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
CUX1P39880 AC233968.1-201ENST00000611212 1300 ntBASIC6.99□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms