Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AL021997.2-201ENST00000615674 271 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 AL590410.1-201ENST00000617925 333 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
HOXC9P31274 AL356094.1-201ENST00000624663 1212 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXC9P31274 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC5.81□□□□□ -1.48
HOXC9P31274 AC104260.2-201ENST00000623551 3497 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 AL672167.1-204ENST00000641875 3017 ntBASIC5.81□□□□□ -1.48
HOXC9P31274 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
HOXC9P31274 POMP-202ENST00000460403 1428 ntTSL 3 BASIC5.81□□□□□ -1.48
HOXC9P31274 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
HOXC9P31274 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXC9P31274 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXC9P31274 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HOXC9P31274 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
HOXC9P31274 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC9P31274 AL122126.1-201ENST00000546905 1318 ntBASIC5.8□□□□□ -1.48
HOXC9P31274 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC9P31274 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC9P31274 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC9P31274 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC9P31274 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC9P31274 RN7SKP224-201ENST00000364140 325 ntBASIC5.8□□□□□ -1.48
HOXC9P31274 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC9P31274 AL445189.1-201ENST00000405722 338 ntBASIC5.8□□□□□ -1.48
HOXC9P31274 AL356806.1-201ENST00000422524 916 ntBASIC5.8□□□□□ -1.48
HOXC9P31274 AL117339.2-201ENST00000430475 180 ntBASIC5.8□□□□□ -1.48
HOXC9P31274 MTCO1P57-201ENST00000432182 261 ntBASIC5.8□□□□□ -1.48
HOXC9P31274 AL512326.1-201ENST00000443050 721 ntBASIC5.8□□□□□ -1.48
HOXC9P31274 AC016687.1-201ENST00000482574 353 ntBASIC5.8□□□□□ -1.48
HOXC9P31274 RWDD4P1-201ENST00000488019 565 ntBASIC5.8□□□□□ -1.48
HOXC9P31274 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC5.8□□□□□ -1.48
HOXC9P31274 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC5.8□□□□□ -1.48
HOXC9P31274 AC006130.2-201ENST00000586202 326 ntBASIC5.8□□□□□ -1.48
HOXC9P31274 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC5.8□□□□□ -1.48
HOXC9P31274 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC5.8□□□□□ -1.48
HOXC9P31274 AC099676.1-201ENST00000608886 657 ntBASIC5.8□□□□□ -1.48
HOXC9P31274 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC5.8□□□□□ -1.48
HOXC9P31274 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC9P31274 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.8□□□□□ -1.48
HOXC9P31274 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC9P31274 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC5.8□□□□□ -1.48
HOXC9P31274 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.8□□□□□ -1.48
HOXC9P31274 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC9P31274 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC9P31274 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
HOXC9P31274 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
HOXC9P31274 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC5.79□□□□□ -1.48
HOXC9P31274 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
HOXC9P31274 PTER-201ENST00000298942 3448 ntTSL 5 BASIC5.79□□□□□ -1.48
HOXC9P31274 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC5.79□□□□□ -1.48
HOXC9P31274 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC5.79□□□□□ -1.48
HOXC9P31274 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
HOXC9P31274 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HOXC9P31274 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC5.79□□□□□ -1.48
HOXC9P31274 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HOXC9P31274 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HOXC9P31274 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXC9P31274 RNU6-1331P-201ENST00000363658 106 ntBASIC5.79□□□□□ -1.48
HOXC9P31274 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC5.79□□□□□ -1.48
HOXC9P31274 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HOXC9P31274 AL590623.1-201ENST00000427864 105 ntBASIC5.79□□□□□ -1.48
HOXC9P31274 COX6B1P7-201ENST00000430845 235 ntBASIC5.79□□□□□ -1.48
HOXC9P31274 CDY14P-201ENST00000431260 1014 ntBASIC5.79□□□□□ -1.48
HOXC9P31274 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.79□□□□□ -1.48
HOXC9P31274 RPEP2-201ENST00000432149 701 ntBASIC5.79□□□□□ -1.48
HOXC9P31274 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC5.79□□□□□ -1.48
HOXC9P31274 AL392003.1-201ENST00000434394 243 ntBASIC5.79□□□□□ -1.48
HOXC9P31274 CDY12P-201ENST00000440679 1015 ntBASIC5.79□□□□□ -1.48
HOXC9P31274 AC006326.1-201ENST00000445465 787 ntBASIC5.79□□□□□ -1.48
HOXC9P31274 CDY13P-201ENST00000445813 1015 ntBASIC5.79□□□□□ -1.48
HOXC9P31274 CDY23P-201ENST00000451661 1014 ntBASIC5.79□□□□□ -1.48
HOXC9P31274 AC069304.1-201ENST00000491593 704 ntBASIC5.79□□□□□ -1.48
HOXC9P31274 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC5.79□□□□□ -1.48
HOXC9P31274 AC010374.1-201ENST00000503762 1237 ntBASIC5.79□□□□□ -1.48
HOXC9P31274 SLC25A15P5-201ENST00000508033 253 ntBASIC5.79□□□□□ -1.48
HOXC9P31274 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HOXC9P31274 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC5.79□□□□□ -1.48
HOXC9P31274 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC5.79□□□□□ -1.48
HOXC9P31274 RGS5-218ENST00000526176 574 ntTSL 4 BASIC5.79□□□□□ -1.48
HOXC9P31274 AL359219.2-201ENST00000555184 348 ntBASIC5.79□□□□□ -1.48
HOXC9P31274 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.79□□□□□ -1.48
HOXC9P31274 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.79□□□□□ -1.48
HOXC9P31274 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC5.79□□□□□ -1.48
HOXC9P31274 AC092474.3-201ENST00000603022 568 ntBASIC5.79□□□□□ -1.48
HOXC9P31274 AC112484.5-201ENST00000624189 228 ntBASIC5.79□□□□□ -1.48
HOXC9P31274 FP325313.1-201ENST00000638228 703 ntBASIC5.79□□□□□ -1.48
HOXC9P31274 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.79□□□□□ -1.48
HOXC9P31274 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.79□□□□□ -1.48
HOXC9P31274 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC5.79□□□□□ -1.48
HOXC9P31274 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.79□□□□□ -1.48
HOXC9P31274 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
HOXC9P31274 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXC9P31274 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.79□□□□□ -1.48
HOXC9P31274 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
HOXC9P31274 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.78□□□□□ -1.48
HOXC9P31274 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.78□□□□□ -1.48
HOXC9P31274 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
HOXC9P31274 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
HOXC9P31274 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 215.5 ms