Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HLA-DMBP28068 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 NDUFA12P1-201ENST00000455914 406 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 MTND6P32-201ENST00000457611 483 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 AC090013.1-201ENST00000485147 480 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 IGKV1-32-201ENST00000519290 311 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 OR5AN2P-201ENST00000534535 896 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 AC234775.3-201ENST00000564612 656 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 AC090312.1-201ENST00000580637 348 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 ELOCP28-201ENST00000590044 317 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 AC073091.2-201ENST00000603205 907 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 5S_rRNA.16-201ENST00000612928 119 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 AL353726.1-201ENST00000614041 1000 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 MIR6780A-201ENST00000615089 68 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 MIR6853-201ENST00000619642 74 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 AC091905.2-201ENST00000623143 306 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 AP002967.1-201ENST00000624203 539 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 U3.53-201ENST00000628922 216 ntBASIC3.44□□□□□ -1.86
HLA-DMBP28068 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
HLA-DMBP28068 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.44□□□□□ -1.86
HLA-DMBP28068 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 NXPH1-205ENST00000602349 1953 ntBASIC3.43□□□□□ -1.86
HLA-DMBP28068 DPY19L2P2-203ENST00000435536 1858 ntBASIC3.43□□□□□ -1.86
HLA-DMBP28068 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 AC108467.2-201ENST00000617640 1597 ntBASIC3.43□□□□□ -1.86
HLA-DMBP28068 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 AL603766.1-201ENST00000407763 664 ntBASIC3.43□□□□□ -1.86
HLA-DMBP28068 AL807761.1-201ENST00000417622 171 ntBASIC3.43□□□□□ -1.86
HLA-DMBP28068 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 RPS12P10-201ENST00000427031 377 ntBASIC3.43□□□□□ -1.86
HLA-DMBP28068 AC005154.2-201ENST00000438110 379 ntBASIC3.43□□□□□ -1.86
HLA-DMBP28068 AC016831.4-201ENST00000438302 307 ntBASIC3.43□□□□□ -1.86
HLA-DMBP28068 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 RPL23AP65-201ENST00000475608 468 ntBASIC3.43□□□□□ -1.86
HLA-DMBP28068 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 RN7SL809P-201ENST00000482040 297 ntBASIC3.43□□□□□ -1.86
HLA-DMBP28068 AC025445.1-201ENST00000502728 300 ntBASIC3.43□□□□□ -1.86
HLA-DMBP28068 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 OR51K1P-201ENST00000510214 950 ntBASIC3.43□□□□□ -1.86
HLA-DMBP28068 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 AL110118.1-201ENST00000553543 400 ntBASIC3.43□□□□□ -1.86
HLA-DMBP28068 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HLA-DMBP28068 AC234771.5-201ENST00000600161 514 ntBASIC3.43□□□□□ -1.86
HLA-DMBP28068 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 AL713998.2-201ENST00000604538 1198 ntBASIC3.43□□□□□ -1.86
HLA-DMBP28068 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 AC239803.2-201ENST00000610161 430 ntBASIC3.43□□□□□ -1.86
HLA-DMBP28068 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
HLA-DMBP28068 ARHGAP42P1-201ENST00000507474 1976 ntBASIC3.43□□□□□ -1.86
HLA-DMBP28068 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
HLA-DMBP28068 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HLA-DMBP28068 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.43□□□□□ -1.86
HLA-DMBP28068 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HLA-DMBP28068 AC139769.1-204ENST00000472297 1931 ntBASIC3.42□□□□□ -1.86
HLA-DMBP28068 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HLA-DMBP28068 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC3.42□□□□□ -1.86
HLA-DMBP28068 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
HLA-DMBP28068 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HLA-DMBP28068 RNA5SP505-201ENST00000364748 108 ntBASIC3.42□□□□□ -1.86
HLA-DMBP28068 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
HLA-DMBP28068 FCF1P5-201ENST00000406490 482 ntBASIC3.42□□□□□ -1.86
HLA-DMBP28068 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HLA-DMBP28068 RNU6-233P-201ENST00000410845 141 ntBASIC3.42□□□□□ -1.86
HLA-DMBP28068 RNA5SP104-201ENST00000410989 118 ntBASIC3.42□□□□□ -1.86
HLA-DMBP28068 AC016397.1-201ENST00000412463 242 ntBASIC3.42□□□□□ -1.86
HLA-DMBP28068 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HLA-DMBP28068 SLC9B1P4-201ENST00000421957 1288 ntBASIC3.42□□□□□ -1.86
HLA-DMBP28068 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC3.42□□□□□ -1.86
HLA-DMBP28068 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC3.42□□□□□ -1.86
HLA-DMBP28068 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.42□□□□□ -1.86
HLA-DMBP28068 RPL23AP93-201ENST00000440847 484 ntBASIC3.42□□□□□ -1.86
HLA-DMBP28068 AC011753.3-201ENST00000443436 406 ntBASIC3.42□□□□□ -1.86
HLA-DMBP28068 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC3.42□□□□□ -1.86
HLA-DMBP28068 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC3.42□□□□□ -1.86
HLA-DMBP28068 AL133244.1-201ENST00000456007 258 ntBASIC3.42□□□□□ -1.86
HLA-DMBP28068 APOOP2-201ENST00000461561 539 ntBASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms