Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH3P20585 AC097505.1-201ENST00000610199 565 ntBASIC4.78□□□□□ -1.64
MSH3P20585 FAM27B-201ENST00000610601 213 ntBASIC4.78□□□□□ -1.64
MSH3P20585 AL121890.2-201ENST00000617644 465 ntBASIC4.78□□□□□ -1.64
MSH3P20585 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH3P20585 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC4.78□□□□□ -1.64
MSH3P20585 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
MSH3P20585 AC015813.6-201ENST00000624409 5808 ntBASIC4.78□□□□□ -1.64
MSH3P20585 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSH3P20585 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.78□□□□□ -1.64
MSH3P20585 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
MSH3P20585 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.78□□□□□ -1.64
MSH3P20585 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.65
MSH3P20585 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
MSH3P20585 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.77□□□□□ -1.65
MSH3P20585 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
MSH3P20585 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
MSH3P20585 NCLP2-201ENST00000416078 1462 ntBASIC4.77□□□□□ -1.65
MSH3P20585 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
MSH3P20585 CASC19-261ENST00000641853 1638 ntBASIC4.77□□□□□ -1.65
MSH3P20585 SNORA72.3-201ENST00000365074 132 ntBASIC4.77□□□□□ -1.65
MSH3P20585 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
MSH3P20585 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
MSH3P20585 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.77□□□□□ -1.65
MSH3P20585 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
MSH3P20585 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.77□□□□□ -1.65
MSH3P20585 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
MSH3P20585 MTND4P11-201ENST00000417020 1058 ntBASIC4.77□□□□□ -1.65
MSH3P20585 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.77□□□□□ -1.65
MSH3P20585 SFR1P2-201ENST00000421841 730 ntBASIC4.77□□□□□ -1.65
MSH3P20585 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC4.77□□□□□ -1.65
MSH3P20585 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC4.77□□□□□ -1.65
MSH3P20585 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC4.77□□□□□ -1.65
MSH3P20585 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.77□□□□□ -1.65
MSH3P20585 TMX2P1-201ENST00000436507 708 ntBASIC4.77□□□□□ -1.65
MSH3P20585 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.77□□□□□ -1.65
MSH3P20585 RHEBP2-201ENST00000450289 600 ntBASIC4.77□□□□□ -1.65
MSH3P20585 OTX2P1-201ENST00000450956 354 ntBASIC4.77□□□□□ -1.65
MSH3P20585 MTATP6P14-201ENST00000455189 673 ntBASIC4.77□□□□□ -1.65
MSH3P20585 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.77□□□□□ -1.65
MSH3P20585 AC083982.1-201ENST00000485679 344 ntBASIC4.77□□□□□ -1.65
MSH3P20585 BTG4P1-201ENST00000510421 183 ntBASIC4.77□□□□□ -1.65
MSH3P20585 AC034244.2-201ENST00000514668 858 ntBASIC4.77□□□□□ -1.65
MSH3P20585 BUD31P1-201ENST00000521828 359 ntBASIC4.77□□□□□ -1.65
MSH3P20585 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC4.77□□□□□ -1.65
MSH3P20585 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC4.77□□□□□ -1.65
MSH3P20585 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.77□□□□□ -1.65
MSH3P20585 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC4.77□□□□□ -1.65
MSH3P20585 MIR3667-201ENST00000581025 74 ntBASIC4.77□□□□□ -1.65
MSH3P20585 AC022726.1-201ENST00000587475 207 ntBASIC4.77□□□□□ -1.65
MSH3P20585 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC4.77□□□□□ -1.65
MSH3P20585 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.77□□□□□ -1.65
MSH3P20585 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
MSH3P20585 MIR6730-201ENST00000622213 67 ntBASIC4.77□□□□□ -1.65
MSH3P20585 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
MSH3P20585 FRG1DP-201ENST00000635586 771 ntBASIC4.77□□□□□ -1.65
MSH3P20585 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC4.77□□□□□ -1.65
MSH3P20585 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC4.77□□□□□ -1.65
MSH3P20585 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
MSH3P20585 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
MSH3P20585 SDAD1P1-202ENST00000524156 2051 ntBASIC4.77□□□□□ -1.65
MSH3P20585 RLIMP2-201ENST00000427891 1563 ntBASIC4.77□□□□□ -1.65
MSH3P20585 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
MSH3P20585 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
MSH3P20585 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.77□□□□□ -1.65
MSH3P20585 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.77□□□□□ -1.65
MSH3P20585 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.76□□□□□ -1.65
MSH3P20585 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
MSH3P20585 TLK1P1-201ENST00000456760 2440 ntBASIC4.76□□□□□ -1.65
MSH3P20585 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.76□□□□□ -1.65
MSH3P20585 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
MSH3P20585 RAD1P1-201ENST00000231383 813 ntBASIC4.76□□□□□ -1.65
MSH3P20585 AC008549.2-201ENST00000333482 706 ntBASIC4.76□□□□□ -1.65
MSH3P20585 RN7SKP103-201ENST00000363848 320 ntBASIC4.76□□□□□ -1.65
MSH3P20585 RNU6-1257P-201ENST00000384625 110 ntBASIC4.76□□□□□ -1.65
MSH3P20585 U3.30-201ENST00000391308 210 ntBASIC4.76□□□□□ -1.65
MSH3P20585 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
MSH3P20585 AC104297.1-201ENST00000393779 870 ntBASIC4.76□□□□□ -1.65
MSH3P20585 AL133270.1-201ENST00000402635 279 ntBASIC4.76□□□□□ -1.65
MSH3P20585 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC4.76□□□□□ -1.65
MSH3P20585 LINC00993-201ENST00000420453 540 ntBASIC4.76□□□□□ -1.65
MSH3P20585 AL606495.1-201ENST00000422100 813 ntBASIC4.76□□□□□ -1.65
MSH3P20585 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC4.76□□□□□ -1.65
MSH3P20585 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC4.76□□□□□ -1.65
MSH3P20585 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC4.76□□□□□ -1.65
MSH3P20585 AL772161.1-201ENST00000439130 476 ntBASIC4.76□□□□□ -1.65
MSH3P20585 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC4.76□□□□□ -1.65
MSH3P20585 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.76□□□□□ -1.65
MSH3P20585 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
MSH3P20585 RPS5P7-201ENST00000456664 608 ntBASIC4.76□□□□□ -1.65
MSH3P20585 AL445433.1-201ENST00000457507 257 ntBASIC4.76□□□□□ -1.65
MSH3P20585 LARP7P4-201ENST00000481075 878 ntBASIC4.76□□□□□ -1.65
MSH3P20585 NAMPTP2-201ENST00000505629 1115 ntBASIC4.76□□□□□ -1.65
MSH3P20585 AC021146.7-201ENST00000509604 775 ntBASIC4.76□□□□□ -1.65
MSH3P20585 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
MSH3P20585 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.76□□□□□ -1.65
MSH3P20585 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC4.76□□□□□ -1.65
MSH3P20585 OR5D15P-201ENST00000531671 942 ntBASIC4.76□□□□□ -1.65
MSH3P20585 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC4.76□□□□□ -1.65
MSH3P20585 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms