Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AP000648.2-201ENST00000624182 404 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 AL512506.2-201ENST00000624472 458 ntBASIC4.45□□□□□ -1.7
LMX1BO60663 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
LMX1BO60663 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.45□□□□□ -1.7
LMX1BO60663 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
LMX1BO60663 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
LMX1BO60663 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
LMX1BO60663 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
LMX1BO60663 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.45□□□□□ -1.7
LMX1BO60663 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.45□□□□□ -1.7
LMX1BO60663 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.45□□□□□ -1.7
LMX1BO60663 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
LMX1BO60663 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
LMX1BO60663 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.44□□□□□ -1.7
LMX1BO60663 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
LMX1BO60663 AC011447.7-201ENST00000624228 1590 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 MTND5P11-201ENST00000511037 1812 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.44□□□□□ -1.7
LMX1BO60663 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
LMX1BO60663 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
LMX1BO60663 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
LMX1BO60663 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC4.44□□□□□ -1.7
LMX1BO60663 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
LMX1BO60663 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
LMX1BO60663 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
LMX1BO60663 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC4.44□□□□□ -1.7
LMX1BO60663 AC013442.1-201ENST00000397347 228 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 LIPT1P1-201ENST00000415870 1186 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 AL807761.1-201ENST00000417622 171 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 AL449283.1-202ENST00000418249 604 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 AC013429.2-201ENST00000418798 781 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 DEFB130D-201ENST00000426866 237 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.44□□□□□ -1.7
LMX1BO60663 RPS6P15-201ENST00000431996 751 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 FTLP19-201ENST00000433300 394 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
LMX1BO60663 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC4.44□□□□□ -1.7
LMX1BO60663 SNRPFP2-201ENST00000440710 251 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC4.44□□□□□ -1.7
LMX1BO60663 AC012512.1-201ENST00000446594 718 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 BTF3P6-201ENST00000448054 499 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.44□□□□□ -1.7
LMX1BO60663 AC090114.3-201ENST00000479267 829 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 AC004263.1-201ENST00000479327 332 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 OR51K1P-201ENST00000510214 950 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 AC110775.1-201ENST00000513721 462 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
LMX1BO60663 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC4.44□□□□□ -1.7
LMX1BO60663 OSBPL9P5-201ENST00000542581 171 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC4.44□□□□□ -1.7
LMX1BO60663 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.44□□□□□ -1.7
LMX1BO60663 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC4.44□□□□□ -1.7
LMX1BO60663 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
LMX1BO60663 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
LMX1BO60663 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
LMX1BO60663 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC4.44□□□□□ -1.7
LMX1BO60663 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC4.44□□□□□ -1.7
LMX1BO60663 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.44□□□□□ -1.7
LMX1BO60663 AC011447.4-201ENST00000587562 111 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 ELOCP28-201ENST00000590044 317 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 ZNF92P3-201ENST00000596594 954 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 AL022161.1-201ENST00000604390 213 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC4.44□□□□□ -1.7
LMX1BO60663 Z95327.3-201ENST00000610385 572 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.44□□□□□ -1.7
LMX1BO60663 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC4.44□□□□□ -1.7
LMX1BO60663 BX005214.3-202ENST00000619809 325 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 AC105105.5-201ENST00000622635 1294 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC4.44□□□□□ -1.7
LMX1BO60663 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC4.44□□□□□ -1.7
LMX1BO60663 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC4.44□□□□□ -1.7
LMX1BO60663 BX649567.1-201ENST00000642071 1134 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
LMX1BO60663 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
LMX1BO60663 PANDAR-201ENST00000629595 1506 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 AL356317.1-201ENST00000396110 1436 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 AL022393.1-201ENST00000625142 1677 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC4.44□□□□□ -1.7
LMX1BO60663 NEAT1-202ENST00000501122 22743 ntBASIC4.44□□□□□ -1.7
LMX1BO60663 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
LMX1BO60663 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC4.43□□□□□ -1.7
LMX1BO60663 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.43□□□□□ -1.7
LMX1BO60663 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LMX1BO60663 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
LMX1BO60663 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LMX1BO60663 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
LMX1BO60663 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LMX1BO60663 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.43□□□□□ -1.7
LMX1BO60663 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
LMX1BO60663 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
LMX1BO60663 SNORD56.4-201ENST00000363883 71 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
LMX1BO60663 RNU6-1242P-201ENST00000391052 103 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
LMX1BO60663 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC4.43□□□□□ -1.7
LMX1BO60663 RPS24P7-201ENST00000416921 246 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 GLUD1P9-201ENST00000420997 1173 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 AC104837.2-201ENST00000427236 424 ntBASIC4.43□□□□□ -1.7
LMX1BO60663 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC4.43□□□□□ -1.7
LMX1BO60663 AC093422.3-201ENST00000428506 305 ntBASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms