Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AC232271.1-201ENST00000602455 2715 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 IGKV7-3-201ENST00000357453 298 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 SNORA17.1-201ENST00000362945 126 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 OR1L1-202ENST00000373686 1083 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 HMGB3P7-201ENST00000400214 611 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AL645733.1-201ENST00000402250 217 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AL133270.1-201ENST00000402635 279 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 SNORA11C-201ENST00000408532 129 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 TEX41-202ENST00000414256 604 ntTSL 5 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AC016907.1-201ENST00000419483 435 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AC006960.1-201ENST00000419980 153 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AL390023.1-201ENST00000428836 262 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AC005345.1-201ENST00000431868 217 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 GTF2IP7-202ENST00000436677 309 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AL445567.1-201ENST00000439121 144 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 MTND5P2-201ENST00000442927 1142 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 RHEBP2-201ENST00000450289 600 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 RN7SL188P-201ENST00000469842 285 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 RPS23P1-201ENST00000491662 432 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AC104971.1-201ENST00000495117 578 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 RPF2P2-201ENST00000504693 896 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AC093755.1-201ENST00000512950 1023 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 RNU6-416P-201ENST00000516265 103 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AC127381.1-201ENST00000555979 939 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 MTCYBP33-201ENST00000575007 1130 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AP005136.1-201ENST00000579765 429 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AC068870.3-201ENST00000625077 2536 ntBASIC5.59□□□□□ -1.51
TDP1Q9NUW8 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
TDP1Q9NUW8 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
TDP1Q9NUW8 AL360270.2-201ENST00000562952 5985 ntBASIC5.59□□□□□ -1.52
TDP1Q9NUW8 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.52
TDP1Q9NUW8 RLIMP2-201ENST00000427891 1563 ntBASIC5.59□□□□□ -1.52
TDP1Q9NUW8 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC5.59□□□□□ -1.52
TDP1Q9NUW8 VPS35P1-201ENST00000563400 1518 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AC131971.1-201ENST00000332881 1482 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 HSPA8P18-201ENST00000439846 1928 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AL138820.1-201ENST00000617901 5305 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 MTND4P31-201ENST00000425607 1343 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 Y_RNA.318-201ENST00000365131 97 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 RNU5A-2P-201ENST00000384337 116 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AL589647.1-201ENST00000402485 466 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AL365203.2-201ENST00000423444 196 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 MGAT2P2-201ENST00000427194 797 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 MTCO1P3-201ENST00000429327 192 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 VN1R54P-201ENST00000435210 1049 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 GSTA7P-201ENST00000438425 448 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AL359265.1-201ENST00000440296 795 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.58□□□□□ -1.52
TDP1Q9NUW8 MTND1P29-201ENST00000448112 647 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AC073850.1-201ENST00000449243 255 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AL935212.3-201ENST00000450729 284 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 ZNF736P5Y-201ENST00000451173 805 ntBASIC5.58□□□□□ -1.52
TDP1Q9NUW8 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms