Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 C1GALT1P1-201ENST00000548895 1089 ntBASIC4.64□□□□□ -1.67
VPS35Q96QK1 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.64□□□□□ -1.67
VPS35Q96QK1 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.64□□□□□ -1.67
VPS35Q96QK1 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.64□□□□□ -1.67
VPS35Q96QK1 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC4.64□□□□□ -1.67
VPS35Q96QK1 AC084036.1-201ENST00000609190 508 ntBASIC4.64□□□□□ -1.67
VPS35Q96QK1 AC016911.1-201ENST00000613297 452 ntBASIC4.64□□□□□ -1.67
VPS35Q96QK1 AC073342.3-201ENST00000624211 193 ntBASIC4.64□□□□□ -1.67
VPS35Q96QK1 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC4.64□□□□□ -1.67
VPS35Q96QK1 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.64□□□□□ -1.67
VPS35Q96QK1 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
VPS35Q96QK1 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.64□□□□□ -1.67
VPS35Q96QK1 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS35Q96QK1 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS35Q96QK1 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS35Q96QK1 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS35Q96QK1 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS35Q96QK1 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS35Q96QK1 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
VPS35Q96QK1 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS35Q96QK1 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS35Q96QK1 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
VPS35Q96QK1 CASC19-284ENST00000642142 1868 ntBASIC4.63□□□□□ -1.67
VPS35Q96QK1 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS35Q96QK1 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS35Q96QK1 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS35Q96QK1 AC079741.1-201ENST00000321498 212 ntBASIC4.63□□□□□ -1.67
VPS35Q96QK1 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
VPS35Q96QK1 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS35Q96QK1 Z98745.1-201ENST00000402553 494 ntBASIC4.63□□□□□ -1.67
VPS35Q96QK1 SNORA11B-201ENST00000408175 129 ntBASIC4.63□□□□□ -1.67
VPS35Q96QK1 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
VPS35Q96QK1 RPS26P4-201ENST00000431743 355 ntBASIC4.63□□□□□ -1.67
VPS35Q96QK1 Z80107.2-201ENST00000445127 392 ntBASIC4.63□□□□□ -1.67
VPS35Q96QK1 RSL24D1P2-201ENST00000445584 366 ntBASIC4.63□□□□□ -1.67
VPS35Q96QK1 AC073264.2-201ENST00000448886 166 ntBASIC4.63□□□□□ -1.67
VPS35Q96QK1 RPL10P17-201ENST00000453852 316 ntBASIC4.63□□□□□ -1.67
VPS35Q96QK1 PSMC1P13-201ENST00000458195 985 ntBASIC4.63□□□□□ -1.67
VPS35Q96QK1 AC112206.1-201ENST00000468416 477 ntBASIC4.63□□□□□ -1.67
VPS35Q96QK1 RPS29P22-201ENST00000472363 168 ntBASIC4.63□□□□□ -1.67
VPS35Q96QK1 RPS23P1-201ENST00000491662 432 ntBASIC4.63□□□□□ -1.67
VPS35Q96QK1 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS35Q96QK1 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS35Q96QK1 AC021146.7-201ENST00000509604 775 ntBASIC4.63□□□□□ -1.67
VPS35Q96QK1 FABP5P6-201ENST00000510588 409 ntBASIC4.63□□□□□ -1.67
VPS35Q96QK1 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.63□□□□□ -1.67
VPS35Q96QK1 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS35Q96QK1 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS35Q96QK1 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS35Q96QK1 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
VPS35Q96QK1 AC068020.1-201ENST00000594215 661 ntBASIC4.63□□□□□ -1.67
VPS35Q96QK1 AC130352.1-201ENST00000602979 661 ntBASIC4.63□□□□□ -1.67
VPS35Q96QK1 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS35Q96QK1 SNX18P1Y-201ENST00000616231 511 ntBASIC4.63□□□□□ -1.67
VPS35Q96QK1 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS35Q96QK1 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
VPS35Q96QK1 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
VPS35Q96QK1 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS35Q96QK1 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.63□□□□□ -1.67
VPS35Q96QK1 RMST-202ENST00000541282 2099 ntTSL 2 BASIC4.63□□□□□ -1.67
VPS35Q96QK1 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS35Q96QK1 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS35Q96QK1 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS35Q96QK1 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 ZNF137P-201ENST00000456718 1920 ntBASIC4.62□□□□□ -1.67
VPS35Q96QK1 AL136164.3-201ENST00000624429 3978 ntBASIC4.62□□□□□ -1.67
VPS35Q96QK1 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS35Q96QK1 MFSD8-216ENST00000641147 4009 ntBASIC4.62□□□□□ -1.67
VPS35Q96QK1 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS35Q96QK1 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 RNA5SP397-201ENST00000391323 118 ntBASIC4.62□□□□□ -1.67
VPS35Q96QK1 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 BTF3P9-201ENST00000418784 283 ntBASIC4.62□□□□□ -1.67
VPS35Q96QK1 EIF4A1P1-201ENST00000420241 934 ntBASIC4.62□□□□□ -1.67
VPS35Q96QK1 AL606490.7-201ENST00000433136 191 ntBASIC4.62□□□□□ -1.67
VPS35Q96QK1 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 CYCSP34-201ENST00000458172 304 ntBASIC4.62□□□□□ -1.67
VPS35Q96QK1 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 CDH12P4-201ENST00000517835 295 ntBASIC4.62□□□□□ -1.67
VPS35Q96QK1 CDH12P3-201ENST00000517935 295 ntBASIC4.62□□□□□ -1.67
VPS35Q96QK1 CDH12P1-201ENST00000518435 295 ntBASIC4.62□□□□□ -1.67
VPS35Q96QK1 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 AC073091.2-201ENST00000603205 907 ntBASIC4.62□□□□□ -1.67
VPS35Q96QK1 AP004372.1-201ENST00000604842 844 ntBASIC4.62□□□□□ -1.67
VPS35Q96QK1 AC009237.17-201ENST00000618111 748 ntBASIC4.62□□□□□ -1.67
VPS35Q96QK1 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC4.62□□□□□ -1.67
VPS35Q96QK1 AC145207.9-201ENST00000623802 325 ntBASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms