Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
VMP1Q96GC9 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
VMP1Q96GC9 RNU6-252P-201ENST00000363232 107 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 OR8V1P-201ENST00000395193 873 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 AL078604.1-201ENST00000404609 466 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 RPL23AP48-201ENST00000406913 488 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 MTATP6P31-201ENST00000406985 692 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 RNU6ATAC21P-201ENST00000408656 126 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 RN7SKP278-201ENST00000410504 342 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 AC005033.1-201ENST00000428904 813 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 PTP4A1P3-201ENST00000433661 420 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 MTCO3P43-201ENST00000440974 771 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 EEF1B2P5-201ENST00000444820 548 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 DNAJB5P1-201ENST00000454004 806 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 CBX1P5-201ENST00000475330 559 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 AC093763.2-201ENST00000505334 1223 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 RNA5SP303-201ENST00000516192 130 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 MAL2-208ENST00000523307 556 ntTSL 4 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 APPL2-203ENST00000546731 684 ntTSL 2 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 AC016180.1-201ENST00000567945 403 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 AC245389.2-201ENST00000616023 576 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 AC243756.2-201ENST00000618406 463 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 AC242843.1-201ENST00000618702 573 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 AC016717.3-201ENST00000624730 554 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 AC135068.12-201ENST00000637370 931 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
VMP1Q96GC9 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
VMP1Q96GC9 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
VMP1Q96GC9 AC126323.6-202ENST00000568092 3511 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
VMP1Q96GC9 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC4.89□□□□□ -1.63
VMP1Q96GC9 MFSD8-220ENST00000641243 1422 ntBASIC4.89□□□□□ -1.63
VMP1Q96GC9 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VMP1Q96GC9 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.88□□□□□ -1.63
VMP1Q96GC9 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
VMP1Q96GC9 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
VMP1Q96GC9 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.88□□□□□ -1.63
VMP1Q96GC9 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.88□□□□□ -1.63
VMP1Q96GC9 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VMP1Q96GC9 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
VMP1Q96GC9 OR9G4-201ENST00000302957 984 ntBASIC4.88□□□□□ -1.63
VMP1Q96GC9 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC4.88□□□□□ -1.63
VMP1Q96GC9 MIR600-201ENST00000385007 98 ntBASIC4.88□□□□□ -1.63
VMP1Q96GC9 RNU2-65P-201ENST00000410162 185 ntBASIC4.88□□□□□ -1.63
VMP1Q96GC9 RN7SKP126-201ENST00000411143 300 ntBASIC4.88□□□□□ -1.63
VMP1Q96GC9 RN7SKP273-201ENST00000411392 314 ntBASIC4.88□□□□□ -1.63
VMP1Q96GC9 BMS1P13-201ENST00000417301 885 ntBASIC4.88□□□□□ -1.63
VMP1Q96GC9 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.88□□□□□ -1.63
VMP1Q96GC9 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
VMP1Q96GC9 AC023347.2-201ENST00000433994 462 ntBASIC4.88□□□□□ -1.63
VMP1Q96GC9 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
VMP1Q96GC9 CLUHP1-201ENST00000435012 1190 ntBASIC4.88□□□□□ -1.63
VMP1Q96GC9 RPS29P10-201ENST00000439197 166 ntBASIC4.88□□□□□ -1.63
VMP1Q96GC9 RPS27P5-201ENST00000444247 244 ntBASIC4.88□□□□□ -1.63
VMP1Q96GC9 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC4.88□□□□□ -1.63
VMP1Q96GC9 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.88□□□□□ -1.63
VMP1Q96GC9 AC133473.1-201ENST00000455173 299 ntBASIC4.88□□□□□ -1.63
VMP1Q96GC9 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.88□□□□□ -1.63
VMP1Q96GC9 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC4.88□□□□□ -1.63
VMP1Q96GC9 AC006427.1-201ENST00000514359 712 ntBASIC4.88□□□□□ -1.63
VMP1Q96GC9 AC027308.1-201ENST00000517993 110 ntBASIC4.88□□□□□ -1.63
VMP1Q96GC9 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC4.88□□□□□ -1.63
VMP1Q96GC9 AL162431.4-201ENST00000604674 411 ntBASIC4.88□□□□□ -1.63
VMP1Q96GC9 TAS2R6P-201ENST00000605022 826 ntBASIC4.88□□□□□ -1.63
VMP1Q96GC9 AL354696.1-201ENST00000614652 497 ntBASIC4.88□□□□□ -1.63
VMP1Q96GC9 AC016769.4-201ENST00000616893 535 ntBASIC4.88□□□□□ -1.63
VMP1Q96GC9 MIR6839-201ENST00000620425 113 ntBASIC4.88□□□□□ -1.63
VMP1Q96GC9 WDR75-207ENST00000631047 270 ntTSL 5 BASIC4.88□□□□□ -1.63
VMP1Q96GC9 AL356489.2-201ENST00000566968 3528 ntBASIC4.88□□□□□ -1.63
VMP1Q96GC9 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.88□□□□□ -1.63
VMP1Q96GC9 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.87□□□□□ -1.63
VMP1Q96GC9 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
VMP1Q96GC9 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
VMP1Q96GC9 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.87□□□□□ -1.63
VMP1Q96GC9 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
VMP1Q96GC9 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 123 ms