Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC5.71□□□□□ -1.5
USP39Q53GS9 AC000095.2-202ENST00000637415 154 ntBASIC5.71□□□□□ -1.5
USP39Q53GS9 TANK-205ENST00000405852 2155 ntTSL 5 BASIC5.71□□□□□ -1.5
USP39Q53GS9 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
USP39Q53GS9 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
USP39Q53GS9 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC5.71□□□□□ -1.5
USP39Q53GS9 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
USP39Q53GS9 MTND5P11-201ENST00000511037 1812 ntBASIC5.71□□□□□ -1.5
USP39Q53GS9 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
USP39Q53GS9 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
USP39Q53GS9 UGT2B24P-201ENST00000514441 1597 ntBASIC5.71□□□□□ -1.5
USP39Q53GS9 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
USP39Q53GS9 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
USP39Q53GS9 MTND4P31-201ENST00000425607 1343 ntBASIC5.71□□□□□ -1.5
USP39Q53GS9 AL355834.1-201ENST00000556602 3965 ntBASIC5.71□□□□□ -1.5
USP39Q53GS9 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
USP39Q53GS9 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
USP39Q53GS9 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
USP39Q53GS9 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
USP39Q53GS9 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
USP39Q53GS9 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
USP39Q53GS9 CR381670.1-201ENST00000624291 1693 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
USP39Q53GS9 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
USP39Q53GS9 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.7□□□□□ -1.5
USP39Q53GS9 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
USP39Q53GS9 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
USP39Q53GS9 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
USP39Q53GS9 SNORD56.4-201ENST00000363883 71 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
USP39Q53GS9 RNU6-224P-201ENST00000384055 107 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 Y_RNA.553-201ENST00000384670 102 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 MIR585-201ENST00000384887 94 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
USP39Q53GS9 MCTS2P-201ENST00000394552 546 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 AC092638.1-201ENST00000411966 1275 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 GLUD1P9-201ENST00000420997 1173 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 RPL7P53-201ENST00000421245 739 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 AL049610.1-201ENST00000423374 372 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC5.7□□□□□ -1.5
USP39Q53GS9 MTND1P32-201ENST00000433043 938 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 CYCSP6-201ENST00000434498 302 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.7□□□□□ -1.5
USP39Q53GS9 COX7BP2-201ENST00000437976 242 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 AC015983.1-201ENST00000441577 373 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 CEACAMP7-201ENST00000444105 496 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 HMGB3P6-201ENST00000444896 598 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.7□□□□□ -1.5
USP39Q53GS9 AURKAPS1-201ENST00000451805 1212 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC5.7□□□□□ -1.5
USP39Q53GS9 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
USP39Q53GS9 RPSAP50-201ENST00000481955 852 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC5.7□□□□□ -1.5
USP39Q53GS9 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
USP39Q53GS9 NDUFB4P12-201ENST00000513465 390 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 AC022447.1-201ENST00000515358 464 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
USP39Q53GS9 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC5.7□□□□□ -1.5
USP39Q53GS9 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.7□□□□□ -1.5
USP39Q53GS9 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.7□□□□□ -1.5
USP39Q53GS9 ELOCP32-201ENST00000548625 324 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC5.7□□□□□ -1.5
USP39Q53GS9 SERPINE4P-201ENST00000554978 281 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
USP39Q53GS9 AC087481.2-201ENST00000565492 330 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 AC021483.2-201ENST00000567415 758 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
USP39Q53GS9 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.7□□□□□ -1.5
USP39Q53GS9 MIR4789-201ENST00000577469 82 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 AP001269.3-201ENST00000588718 329 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 AC073544.2-201ENST00000601155 540 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 AF131215.7-201ENST00000602443 707 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 AL445423.1-201ENST00000609941 536 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 AC068870.2-201ENST00000620635 389 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 FP325313.1-201ENST00000638228 703 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 AC099654.10-201ENST00000640395 161 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
USP39Q53GS9 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
USP39Q53GS9 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.7□□□□□ -1.5
USP39Q53GS9 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
USP39Q53GS9 LINC01963-201ENST00000562038 3148 ntBASIC5.7□□□□□ -1.5
USP39Q53GS9 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
USP39Q53GS9 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.69□□□□□ -1.5
USP39Q53GS9 AP004607.3-201ENST00000530354 3915 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP39Q53GS9 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP39Q53GS9 SMG1P7-201ENST00000565246 2704 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.69□□□□□ -1.5
USP39Q53GS9 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP39Q53GS9 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
USP39Q53GS9 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
USP39Q53GS9 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.69□□□□□ -1.5
USP39Q53GS9 MTND4P29-201ENST00000503122 1372 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
USP39Q53GS9 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.69□□□□□ -1.5
USP39Q53GS9 AC097461.1-201ENST00000568928 2821 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 SGO1P2-201ENST00000429458 1589 ntBASIC5.69□□□□□ -1.5
USP39Q53GS9 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
USP39Q53GS9 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.69□□□□□ -1.5
USP39Q53GS9 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms