Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC3.29□□□□□ -1.88
FOXA3P55318 AC007424.1-203ENST00000554613 687 ntBASIC3.29□□□□□ -1.88
FOXA3P55318 AC018552.3-201ENST00000567416 561 ntBASIC3.29□□□□□ -1.88
FOXA3P55318 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC3.29□□□□□ -1.88
FOXA3P55318 Z98200.1-201ENST00000607298 470 ntBASIC3.29□□□□□ -1.88
FOXA3P55318 AL359715.5-201ENST00000623431 443 ntBASIC3.29□□□□□ -1.88
FOXA3P55318 AC022893.2-201ENST00000564832 3296 ntBASIC3.29□□□□□ -1.88
FOXA3P55318 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
FOXA3P55318 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
FOXA3P55318 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
FOXA3P55318 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
FOXA3P55318 SAMMSON-226ENST00000642089 1582 ntBASIC3.29□□□□□ -1.88
FOXA3P55318 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA3P55318 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.28□□□□□ -1.88
FOXA3P55318 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA3P55318 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA3P55318 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA3P55318 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA3P55318 METTL5-202ENST00000308099 629 ntTSL 3 BASIC3.28□□□□□ -1.88
FOXA3P55318 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA3P55318 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA3P55318 MIR143-201ENST00000385300 106 ntBASIC3.28□□□□□ -1.88
FOXA3P55318 AL607077.1-201ENST00000401718 499 ntBASIC3.28□□□□□ -1.88
FOXA3P55318 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC3.28□□□□□ -1.88
FOXA3P55318 RNA5SP239-201ENST00000410218 129 ntBASIC3.28□□□□□ -1.88
FOXA3P55318 MIR1911-201ENST00000410783 80 ntBASIC3.28□□□□□ -1.88
FOXA3P55318 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC3.28□□□□□ -1.88
FOXA3P55318 AL138787.1-202ENST00000437804 898 ntBASIC3.28□□□□□ -1.88
FOXA3P55318 FHP1-201ENST00000442741 703 ntBASIC3.28□□□□□ -1.88
FOXA3P55318 AL035551.1-201ENST00000446931 348 ntBASIC3.28□□□□□ -1.88
FOXA3P55318 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC3.28□□□□□ -1.88
FOXA3P55318 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC3.28□□□□□ -1.88
FOXA3P55318 OR2AO1P-201ENST00000476497 403 ntBASIC3.28□□□□□ -1.88
FOXA3P55318 BX284632.1-201ENST00000478218 541 ntBASIC3.28□□□□□ -1.88
FOXA3P55318 AC006517.1-201ENST00000480485 328 ntBASIC3.28□□□□□ -1.88
FOXA3P55318 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.28□□□□□ -1.88
FOXA3P55318 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.28□□□□□ -1.88
FOXA3P55318 SSX6-203ENST00000509958 336 ntTSL 3 BASIC3.28□□□□□ -1.88
FOXA3P55318 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA3P55318 RNU2-30P-201ENST00000516209 141 ntBASIC3.28□□□□□ -1.88
FOXA3P55318 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC3.28□□□□□ -1.88
FOXA3P55318 GCSHP4-201ENST00000538792 439 ntBASIC3.28□□□□□ -1.88
FOXA3P55318 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC3.28□□□□□ -1.88
FOXA3P55318 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC3.28□□□□□ -1.88
FOXA3P55318 AC092490.3-201ENST00000545370 572 ntBASIC3.28□□□□□ -1.88
FOXA3P55318 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.28□□□□□ -1.88
FOXA3P55318 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC3.28□□□□□ -1.88
FOXA3P55318 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC3.28□□□□□ -1.88
FOXA3P55318 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.28□□□□□ -1.88
FOXA3P55318 NDUFA5P11-201ENST00000567995 343 ntBASIC3.28□□□□□ -1.88
FOXA3P55318 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC3.28□□□□□ -1.88
FOXA3P55318 MIR3614-201ENST00000581261 86 ntBASIC3.28□□□□□ -1.88
FOXA3P55318 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC3.28□□□□□ -1.88
FOXA3P55318 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC3.28□□□□□ -1.88
FOXA3P55318 AL357153.4-201ENST00000620487 1016 ntBASIC3.28□□□□□ -1.88
FOXA3P55318 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC3.28□□□□□ -1.88
FOXA3P55318 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA3P55318 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
FOXA3P55318 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.28□□□□□ -1.88
FOXA3P55318 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC3.28□□□□□ -1.89
FOXA3P55318 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA3P55318 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.27□□□□□ -1.89
FOXA3P55318 CYP1D1P-201ENST00000416662 1433 ntBASIC3.27□□□□□ -1.89
FOXA3P55318 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA3P55318 AC083899.2-201ENST00000423285 1376 ntBASIC3.27□□□□□ -1.89
FOXA3P55318 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC3.27□□□□□ -1.89
FOXA3P55318 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA3P55318 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA3P55318 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
FOXA3P55318 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA3P55318 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
FOXA3P55318 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
FOXA3P55318 NPM1P4-201ENST00000414095 812 ntBASIC3.27□□□□□ -1.89
FOXA3P55318 AL391219.1-201ENST00000422570 483 ntBASIC3.27□□□□□ -1.89
FOXA3P55318 MTND4LP13-201ENST00000425022 298 ntBASIC3.27□□□□□ -1.89
FOXA3P55318 FGF12-202ENST00000430714 603 ntTSL 2 BASIC3.27□□□□□ -1.89
FOXA3P55318 ATP5HP2-201ENST00000433885 485 ntBASIC3.27□□□□□ -1.89
FOXA3P55318 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXA3P55318 PA2G4P6-201ENST00000438325 1197 ntBASIC3.27□□□□□ -1.89
FOXA3P55318 HMGB1P16-201ENST00000447155 540 ntBASIC3.27□□□□□ -1.89
FOXA3P55318 EIF2S2P4-201ENST00000461070 984 ntBASIC3.27□□□□□ -1.89
FOXA3P55318 AC104763.1-201ENST00000475274 360 ntBASIC3.27□□□□□ -1.89
FOXA3P55318 RN7SL808P-201ENST00000496066 299 ntBASIC3.27□□□□□ -1.89
FOXA3P55318 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC3.27□□□□□ -1.89
FOXA3P55318 AC025554.1-201ENST00000505641 188 ntBASIC3.27□□□□□ -1.89
FOXA3P55318 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC3.27□□□□□ -1.89
FOXA3P55318 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC3.27□□□□□ -1.89
FOXA3P55318 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXA3P55318 RNU6-943P-201ENST00000516960 98 ntBASIC3.27□□□□□ -1.89
FOXA3P55318 IGHV3-32-201ENST00000519182 355 ntBASIC3.27□□□□□ -1.89
FOXA3P55318 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC3.27□□□□□ -1.89
FOXA3P55318 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC3.27□□□□□ -1.89
FOXA3P55318 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
FOXA3P55318 RFPL1S-203ENST00000539579 330 ntBASIC3.27□□□□□ -1.89
FOXA3P55318 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC3.27□□□□□ -1.89
FOXA3P55318 AC016180.1-201ENST00000567945 403 ntBASIC3.27□□□□□ -1.89
FOXA3P55318 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.27□□□□□ -1.89
FOXA3P55318 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.27□□□□□ -1.89
FOXA3P55318 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC3.27□□□□□ -1.89
FOXA3P55318 AC015922.4-201ENST00000612568 690 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms