Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RPL12P25-202ENST00000598100 674 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 AC113403.1-201ENST00000604910 193 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 uc_338.13-201ENST00000618243 179 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 AP001784.1-201ENST00000624107 428 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.11□□□□□ -1.75
FOXA1P55317 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.11□□□□□ -1.75
FOXA1P55317 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
FOXA1P55317 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
FOXA1P55317 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXA1P55317 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXA1P55317 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXA1P55317 AC120338.1-201ENST00000625074 1541 ntBASIC4.11□□□□□ -1.75
FOXA1P55317 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
FOXA1P55317 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA1P55317 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
FOXA1P55317 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA1P55317 AC090017.1-201ENST00000548612 1779 ntBASIC4.1□□□□□ -1.75
FOXA1P55317 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC4.1□□□□□ -1.75
FOXA1P55317 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA1P55317 AC103591.2-201ENST00000265259 766 ntBASIC4.1□□□□□ -1.75
FOXA1P55317 AL133270.1-201ENST00000402635 279 ntBASIC4.1□□□□□ -1.75
FOXA1P55317 MFSD13B-201ENST00000420133 1290 ntBASIC4.1□□□□□ -1.75
FOXA1P55317 AL356387.2-201ENST00000422272 243 ntBASIC4.1□□□□□ -1.75
FOXA1P55317 EIF1P3-201ENST00000423841 334 ntBASIC4.1□□□□□ -1.75
FOXA1P55317 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC4.1□□□□□ -1.75
FOXA1P55317 RPL7L1P1-201ENST00000448259 785 ntBASIC4.1□□□□□ -1.75
FOXA1P55317 AC090589.1-201ENST00000473109 362 ntBASIC4.1□□□□□ -1.75
FOXA1P55317 BNIP3P41-201ENST00000503774 571 ntBASIC4.1□□□□□ -1.75
FOXA1P55317 AC017037.1-201ENST00000508460 471 ntBASIC4.1□□□□□ -1.75
FOXA1P55317 MYL12AP1-201ENST00000518490 515 ntBASIC4.1□□□□□ -1.75
FOXA1P55317 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXA1P55317 TRAV8-5-201ENST00000537369 341 ntBASIC4.1□□□□□ -1.75
FOXA1P55317 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA1P55317 AC007599.1-201ENST00000568688 1174 ntBASIC4.1□□□□□ -1.75
FOXA1P55317 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
FOXA1P55317 AC025175.1-201ENST00000606482 759 ntBASIC4.1□□□□□ -1.75
FOXA1P55317 AC239803.2-201ENST00000610161 430 ntBASIC4.1□□□□□ -1.75
FOXA1P55317 AL049539.1-201ENST00000611964 459 ntBASIC4.1□□□□□ -1.75
FOXA1P55317 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC4.1□□□□□ -1.75
FOXA1P55317 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
FOXA1P55317 MFSD8-216ENST00000641147 4009 ntBASIC4.1□□□□□ -1.75
FOXA1P55317 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.1□□□□□ -1.75
FOXA1P55317 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA1P55317 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.1□□□□□ -1.75
FOXA1P55317 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
FOXA1P55317 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
FOXA1P55317 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.09□□□□□ -1.75
FOXA1P55317 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.09□□□□□ -1.75
FOXA1P55317 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.09□□□□□ -1.75
FOXA1P55317 AC025031.4-201ENST00000621248 3271 ntBASIC4.09□□□□□ -1.75
FOXA1P55317 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
FOXA1P55317 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.09□□□□□ -1.75
FOXA1P55317 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
FOXA1P55317 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.75
FOXA1P55317 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
FOXA1P55317 RNA5SP443-201ENST00000363083 132 ntBASIC4.09□□□□□ -1.75
FOXA1P55317 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
FOXA1P55317 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
FOXA1P55317 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
FOXA1P55317 MIR129-1-201ENST00000384972 72 ntBASIC4.09□□□□□ -1.75
FOXA1P55317 AL607077.1-201ENST00000401718 499 ntBASIC4.09□□□□□ -1.75
FOXA1P55317 RNA5SP306-201ENST00000411087 107 ntBASIC4.09□□□□□ -1.75
FOXA1P55317 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC4.09□□□□□ -1.75
FOXA1P55317 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
FOXA1P55317 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.09□□□□□ -1.75
FOXA1P55317 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.09□□□□□ -1.75
FOXA1P55317 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
FOXA1P55317 AL353748.1-201ENST00000440753 474 ntBASIC4.09□□□□□ -1.75
FOXA1P55317 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
FOXA1P55317 EEF1A1P1-201ENST00000447052 739 ntBASIC4.09□□□□□ -1.75
FOXA1P55317 EIF4A2P4-201ENST00000458691 1196 ntBASIC4.09□□□□□ -1.75
FOXA1P55317 RPL23AP72-201ENST00000492447 435 ntBASIC4.09□□□□□ -1.75
FOXA1P55317 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC4.09□□□□□ -1.75
FOXA1P55317 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC4.09□□□□□ -1.75
FOXA1P55317 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.09□□□□□ -1.75
FOXA1P55317 UBTFL9-201ENST00000534504 1148 ntBASIC4.09□□□□□ -1.75
FOXA1P55317 AC068831.4-201ENST00000556118 109 ntBASIC4.09□□□□□ -1.75
FOXA1P55317 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.09□□□□□ -1.75
FOXA1P55317 Mico1.1-201ENST00000611698 204 ntBASIC4.09□□□□□ -1.75
FOXA1P55317 AC015922.4-201ENST00000612568 690 ntBASIC4.09□□□□□ -1.75
FOXA1P55317 AC095038.2-201ENST00000621464 1070 ntBASIC4.09□□□□□ -1.75
FOXA1P55317 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC4.09□□□□□ -1.75
FOXA1P55317 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC4.09□□□□□ -1.75
FOXA1P55317 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
FOXA1P55317 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
FOXA1P55317 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.09□□□□□ -1.76
FOXA1P55317 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
FOXA1P55317 A2MP1-204ENST00000566278 4130 ntBASIC4.08□□□□□ -1.76
FOXA1P55317 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
FOXA1P55317 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.08□□□□□ -1.76
FOXA1P55317 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
FOXA1P55317 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
FOXA1P55317 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
FOXA1P55317 RNA5SP505-201ENST00000364748 108 ntBASIC4.08□□□□□ -1.76
FOXA1P55317 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
FOXA1P55317 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.08□□□□□ -1.76
FOXA1P55317 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
FOXA1P55317 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
FOXA1P55317 AL121834.1-202ENST00000404494 277 ntBASIC4.08□□□□□ -1.76
FOXA1P55317 RNA5SP36-201ENST00000410197 133 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms