Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.3□□□□□ -1.56
COL5A3P25940 AC112230.1-201ENST00000604342 547 ntBASIC5.3□□□□□ -1.56
COL5A3P25940 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL5A3P25940 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.3□□□□□ -1.56
COL5A3P25940 SUPT16HP1-201ENST00000537175 3133 ntBASIC5.3□□□□□ -1.56
COL5A3P25940 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
COL5A3P25940 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.3□□□□□ -1.56
COL5A3P25940 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL5A3P25940 VPS35P1-201ENST00000563400 1518 ntBASIC5.3□□□□□ -1.56
COL5A3P25940 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL5A3P25940 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A3P25940 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
COL5A3P25940 ERCC6-202ENST00000374127 1782 ntBASIC5.29□□□□□ -1.56
COL5A3P25940 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC5.29□□□□□ -1.56
COL5A3P25940 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A3P25940 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A3P25940 RNU6-213P-201ENST00000384051 104 ntBASIC5.29□□□□□ -1.56
COL5A3P25940 SNORA5A-201ENST00000384111 134 ntBASIC5.29□□□□□ -1.56
COL5A3P25940 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC5.29□□□□□ -1.56
COL5A3P25940 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.29□□□□□ -1.56
COL5A3P25940 EIF1P3-201ENST00000423841 334 ntBASIC5.29□□□□□ -1.56
COL5A3P25940 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.29□□□□□ -1.56
COL5A3P25940 PPIAP13-201ENST00000434706 478 ntBASIC5.29□□□□□ -1.56
COL5A3P25940 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.29□□□□□ -1.56
COL5A3P25940 OR5D2P-201ENST00000524390 911 ntBASIC5.29□□□□□ -1.56
COL5A3P25940 AC006064.5-201ENST00000541782 248 ntBASIC5.29□□□□□ -1.56
COL5A3P25940 AC090312.1-201ENST00000580637 348 ntBASIC5.29□□□□□ -1.56
COL5A3P25940 AC017100.2-201ENST00000584628 355 ntBASIC5.29□□□□□ -1.56
COL5A3P25940 AC067931.1-201ENST00000624190 671 ntBASIC5.29□□□□□ -1.56
COL5A3P25940 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A3P25940 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A3P25940 AP001002.1-201ENST00000625148 1513 ntBASIC5.29□□□□□ -1.56
COL5A3P25940 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A3P25940 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL5A3P25940 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC5.28□□□□□ -1.56
COL5A3P25940 SNORA9-201ENST00000384215 133 ntBASIC5.28□□□□□ -1.56
COL5A3P25940 RNU1-44P-201ENST00000384453 163 ntBASIC5.28□□□□□ -1.56
COL5A3P25940 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.28□□□□□ -1.56
COL5A3P25940 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A3P25940 AL358472.1-201ENST00000431295 329 ntBASIC5.28□□□□□ -1.56
COL5A3P25940 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC5.28□□□□□ -1.56
COL5A3P25940 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.28□□□□□ -1.56
COL5A3P25940 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC5.28□□□□□ -1.56
COL5A3P25940 IGKV2D-19-201ENST00000523346 262 ntBASIC5.28□□□□□ -1.56
COL5A3P25940 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC5.28□□□□□ -1.56
COL5A3P25940 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC5.28□□□□□ -1.56
COL5A3P25940 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A3P25940 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
COL5A3P25940 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A3P25940 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A3P25940 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A3P25940 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A3P25940 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A3P25940 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A3P25940 AC097461.1-201ENST00000568928 2821 ntBASIC5.28□□□□□ -1.56
COL5A3P25940 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.28□□□□□ -1.56
COL5A3P25940 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A3P25940 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
COL5A3P25940 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A3P25940 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A3P25940 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
COL5A3P25940 SNORA73.2-201ENST00000364946 201 ntBASIC5.28□□□□□ -1.56
COL5A3P25940 MIR1179-201ENST00000408703 91 ntBASIC5.28□□□□□ -1.56
COL5A3P25940 RN7SKP156-201ENST00000410308 342 ntBASIC5.28□□□□□ -1.56
COL5A3P25940 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC5.28□□□□□ -1.56
COL5A3P25940 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC5.28□□□□□ -1.56
COL5A3P25940 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A3P25940 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A3P25940 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC5.28□□□□□ -1.56
COL5A3P25940 AL352979.3-201ENST00000553515 247 ntBASIC5.28□□□□□ -1.56
COL5A3P25940 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC5.28□□□□□ -1.56
COL5A3P25940 AL592436.1-201ENST00000605135 558 ntBASIC5.28□□□□□ -1.56
COL5A3P25940 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A3P25940 AC084757.4-201ENST00000616350 526 ntBASIC5.28□□□□□ -1.56
COL5A3P25940 AC091905.2-201ENST00000623143 306 ntBASIC5.28□□□□□ -1.56
COL5A3P25940 MAPK10-286ENST00000641208 8747 ntBASIC5.28□□□□□ -1.56
COL5A3P25940 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A3P25940 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
COL5A3P25940 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL5A3P25940 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
COL5A3P25940 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL5A3P25940 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.27□□□□□ -1.57
COL5A3P25940 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL5A3P25940 AC016588.2-201ENST00000632484 3021 ntBASIC5.27□□□□□ -1.57
COL5A3P25940 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC5.27□□□□□ -1.57
COL5A3P25940 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC5.27□□□□□ -1.57
COL5A3P25940 UBTFL3-201ENST00000418934 1024 ntBASIC5.27□□□□□ -1.57
COL5A3P25940 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC5.27□□□□□ -1.57
COL5A3P25940 DNAJA1P1-201ENST00000425106 1187 ntBASIC5.27□□□□□ -1.57
COL5A3P25940 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC5.27□□□□□ -1.57
COL5A3P25940 UBTFL6-201ENST00000477929 1024 ntBASIC5.27□□□□□ -1.57
COL5A3P25940 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL5A3P25940 KRT19P6-201ENST00000510983 209 ntBASIC5.27□□□□□ -1.57
COL5A3P25940 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC5.27□□□□□ -1.57
COL5A3P25940 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC5.27□□□□□ -1.57
COL5A3P25940 SNORA51-201ENST00000606420 132 ntBASIC5.27□□□□□ -1.57
COL5A3P25940 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC5.27□□□□□ -1.57
COL5A3P25940 AC012314.7-201ENST00000619693 93 ntBASIC5.27□□□□□ -1.57
COL5A3P25940 AC244100.1-202ENST00000621554 382 ntBASIC5.27□□□□□ -1.57
COL5A3P25940 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 129.3 ms