Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 H2AFZP6-201ENST00000444403 394 ntBASIC4.4□□□□□ -1.71
CLDN9O95484 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CLDN9O95484 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.4□□□□□ -1.71
CLDN9O95484 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.4□□□□□ -1.71
CLDN9O95484 AC011005.3-201ENST00000491624 395 ntBASIC4.4□□□□□ -1.71
CLDN9O95484 MTND4LP2-201ENST00000502312 285 ntBASIC4.4□□□□□ -1.71
CLDN9O95484 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.4□□□□□ -1.71
CLDN9O95484 AC021146.3-201ENST00000511911 260 ntBASIC4.4□□□□□ -1.71
CLDN9O95484 AC090151.1-201ENST00000520784 730 ntBASIC4.4□□□□□ -1.71
CLDN9O95484 AC009268.1-201ENST00000561352 1203 ntBASIC4.4□□□□□ -1.71
CLDN9O95484 SLC25A36P1-201ENST00000590111 465 ntBASIC4.4□□□□□ -1.71
CLDN9O95484 AL008729.2-201ENST00000606393 473 ntBASIC4.4□□□□□ -1.71
CLDN9O95484 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.4□□□□□ -1.71
CLDN9O95484 uc_338.18-201ENST00000615451 175 ntBASIC4.4□□□□□ -1.71
CLDN9O95484 AP001784.1-201ENST00000624107 428 ntBASIC4.4□□□□□ -1.71
CLDN9O95484 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.4□□□□□ -1.71
CLDN9O95484 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC4.4□□□□□ -1.71
CLDN9O95484 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.4□□□□□ -1.71
CLDN9O95484 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.4□□□□□ -1.71
CLDN9O95484 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CLDN9O95484 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.4□□□□□ -1.71
CLDN9O95484 AC125257.1-201ENST00000560400 2930 ntBASIC4.4□□□□□ -1.71
CLDN9O95484 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CLDN9O95484 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
CLDN9O95484 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CLDN9O95484 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
CLDN9O95484 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.4□□□□□ -1.71
CLDN9O95484 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CLDN9O95484 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.39□□□□□ -1.71
CLDN9O95484 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CLDN9O95484 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.39□□□□□ -1.71
CLDN9O95484 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CLDN9O95484 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CLDN9O95484 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
CLDN9O95484 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.39□□□□□ -1.71
CLDN9O95484 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CLDN9O95484 OR1F12-201ENST00000402365 945 ntBASIC4.39□□□□□ -1.71
CLDN9O95484 RPL21P108-201ENST00000413857 481 ntBASIC4.39□□□□□ -1.71
CLDN9O95484 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.39□□□□□ -1.71
CLDN9O95484 AC062016.2-201ENST00000420950 676 ntBASIC4.39□□□□□ -1.71
CLDN9O95484 OR6K4P-201ENST00000423179 955 ntBASIC4.39□□□□□ -1.71
CLDN9O95484 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.39□□□□□ -1.71
CLDN9O95484 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC4.39□□□□□ -1.71
CLDN9O95484 RPL5P13-201ENST00000462840 709 ntBASIC4.39□□□□□ -1.71
CLDN9O95484 AC083982.1-201ENST00000485679 344 ntBASIC4.39□□□□□ -1.71
CLDN9O95484 RNA5SP228-201ENST00000516232 133 ntBASIC4.39□□□□□ -1.71
CLDN9O95484 CDH12P4-201ENST00000517835 295 ntBASIC4.39□□□□□ -1.71
CLDN9O95484 CDH12P3-201ENST00000517935 295 ntBASIC4.39□□□□□ -1.71
CLDN9O95484 CDH12P1-201ENST00000518435 295 ntBASIC4.39□□□□□ -1.71
CLDN9O95484 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.39□□□□□ -1.71
CLDN9O95484 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC4.39□□□□□ -1.71
CLDN9O95484 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.39□□□□□ -1.71
CLDN9O95484 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.39□□□□□ -1.71
CLDN9O95484 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
CLDN9O95484 AC092868.3-201ENST00000560515 784 ntBASIC4.39□□□□□ -1.71
CLDN9O95484 BPIFA4P-203ENST00000603168 689 ntBASIC4.39□□□□□ -1.71
CLDN9O95484 AC103792.1-201ENST00000603591 919 ntBASIC4.39□□□□□ -1.71
CLDN9O95484 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.39□□□□□ -1.71
CLDN9O95484 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.39□□□□□ -1.71
CLDN9O95484 AL133338.2-201ENST00000604292 736 ntBASIC4.39□□□□□ -1.71
CLDN9O95484 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC4.39□□□□□ -1.71
CLDN9O95484 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
CLDN9O95484 AC091953.3-201ENST00000623220 236 ntBASIC4.39□□□□□ -1.71
CLDN9O95484 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC4.39□□□□□ -1.71
CLDN9O95484 NXPH1-205ENST00000602349 1953 ntBASIC4.39□□□□□ -1.71
CLDN9O95484 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC4.39□□□□□ -1.71
CLDN9O95484 RMST-202ENST00000541282 2099 ntTSL 2 BASIC4.39□□□□□ -1.71
CLDN9O95484 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.39□□□□□ -1.71
CLDN9O95484 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CLDN9O95484 AC006971.1-201ENST00000407916 4486 ntBASIC4.38□□□□□ -1.71
CLDN9O95484 AC010928.1-201ENST00000592477 1447 ntBASIC4.38□□□□□ -1.71
CLDN9O95484 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.38□□□□□ -1.71
CLDN9O95484 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
CLDN9O95484 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
CLDN9O95484 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CLDN9O95484 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.38□□□□□ -1.71
CLDN9O95484 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CLDN9O95484 AC021146.4-201ENST00000309229 279 ntBASIC4.38□□□□□ -1.71
CLDN9O95484 RNU6-819P-201ENST00000364116 107 ntBASIC4.38□□□□□ -1.71
CLDN9O95484 RNU1-63P-201ENST00000383902 164 ntBASIC4.38□□□□□ -1.71
CLDN9O95484 AC240504.1-201ENST00000395709 845 ntBASIC4.38□□□□□ -1.71
CLDN9O95484 MIR298-201ENST00000401212 88 ntBASIC4.38□□□□□ -1.71
CLDN9O95484 HDGFP1-201ENST00000405943 252 ntBASIC4.38□□□□□ -1.71
CLDN9O95484 NCSTNP1-201ENST00000406229 144 ntBASIC4.38□□□□□ -1.71
CLDN9O95484 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.38□□□□□ -1.71
CLDN9O95484 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.38□□□□□ -1.71
CLDN9O95484 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC4.38□□□□□ -1.71
CLDN9O95484 XKRYP6-201ENST00000440468 1116 ntBASIC4.38□□□□□ -1.71
CLDN9O95484 XKRYP3-201ENST00000442113 1116 ntBASIC4.38□□□□□ -1.71
CLDN9O95484 EIF2S2P4-201ENST00000461070 984 ntBASIC4.38□□□□□ -1.71
CLDN9O95484 RN7SL809P-201ENST00000482040 297 ntBASIC4.38□□□□□ -1.71
CLDN9O95484 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CLDN9O95484 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CLDN9O95484 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.38□□□□□ -1.71
CLDN9O95484 RNA5SP360-201ENST00000516555 118 ntBASIC4.38□□□□□ -1.71
CLDN9O95484 OR4V1P-201ENST00000525394 1140 ntBASIC4.38□□□□□ -1.71
CLDN9O95484 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.38□□□□□ -1.71
CLDN9O95484 C1GALT1P1-201ENST00000548895 1089 ntBASIC4.38□□□□□ -1.71
CLDN9O95484 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.38□□□□□ -1.71
CLDN9O95484 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms