Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC005962.2-201ENST00000611427 652 ntBASIC4.92□□□□□ -1.62
MSH4O15457 BNIP3P41-202ENST00000616656 861 ntBASIC4.92□□□□□ -1.62
MSH4O15457 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.92□□□□□ -1.62
MSH4O15457 AC007546.1-201ENST00000619452 559 ntBASIC4.92□□□□□ -1.62
MSH4O15457 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC4.92□□□□□ -1.62
MSH4O15457 AC140479.6-201ENST00000633535 357 ntBASIC4.92□□□□□ -1.62
MSH4O15457 FP325313.1-201ENST00000638228 703 ntBASIC4.92□□□□□ -1.62
MSH4O15457 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
MSH4O15457 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
MSH4O15457 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
MSH4O15457 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.92□□□□□ -1.62
MSH4O15457 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
MSH4O15457 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.91□□□□□ -1.62
MSH4O15457 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
MSH4O15457 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
MSH4O15457 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
MSH4O15457 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
MSH4O15457 AL158163.1-201ENST00000603915 1649 ntBASIC4.91□□□□□ -1.62
MSH4O15457 SNORA62-201ENST00000365493 153 ntBASIC4.91□□□□□ -1.62
MSH4O15457 AC011933.1-201ENST00000413334 321 ntBASIC4.91□□□□□ -1.62
MSH4O15457 AC234781.4-201ENST00000419384 244 ntBASIC4.91□□□□□ -1.62
MSH4O15457 RPS27AP15-201ENST00000447672 466 ntBASIC4.91□□□□□ -1.62
MSH4O15457 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC4.91□□□□□ -1.62
MSH4O15457 AC116533.1-201ENST00000459748 321 ntBASIC4.91□□□□□ -1.62
MSH4O15457 RPS23P7-201ENST00000466210 444 ntBASIC4.91□□□□□ -1.62
MSH4O15457 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.91□□□□□ -1.62
MSH4O15457 RPL23AP65-201ENST00000475608 468 ntBASIC4.91□□□□□ -1.62
MSH4O15457 AC041039.1-201ENST00000485656 536 ntBASIC4.91□□□□□ -1.62
MSH4O15457 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.91□□□□□ -1.62
MSH4O15457 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.91□□□□□ -1.62
MSH4O15457 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.91□□□□□ -1.62
MSH4O15457 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
MSH4O15457 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC4.91□□□□□ -1.62
MSH4O15457 PSMB7P1-201ENST00000556349 514 ntBASIC4.91□□□□□ -1.62
MSH4O15457 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC4.91□□□□□ -1.62
MSH4O15457 AL021997.2-201ENST00000615674 271 ntBASIC4.91□□□□□ -1.62
MSH4O15457 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.91□□□□□ -1.62
MSH4O15457 AP003497.2-201ENST00000624220 967 ntBASIC4.91□□□□□ -1.62
MSH4O15457 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.91□□□□□ -1.62
MSH4O15457 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.91□□□□□ -1.62
MSH4O15457 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
MSH4O15457 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.91□□□□□ -1.62
MSH4O15457 AC104260.2-201ENST00000623551 3497 ntBASIC4.91□□□□□ -1.62
MSH4O15457 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
MSH4O15457 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC4.9□□□□□ -1.62
MSH4O15457 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.62
MSH4O15457 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.62
MSH4O15457 MTND5P23-201ENST00000430812 1655 ntBASIC4.9□□□□□ -1.62
MSH4O15457 AC245100.2-201ENST00000454544 1679 ntBASIC4.9□□□□□ -1.62
MSH4O15457 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
MSH4O15457 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC4.9□□□□□ -1.62
MSH4O15457 RAB9AP4-201ENST00000415230 609 ntBASIC4.9□□□□□ -1.63
MSH4O15457 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.9□□□□□ -1.63
MSH4O15457 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
MSH4O15457 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC4.9□□□□□ -1.63
MSH4O15457 COX6CP17-201ENST00000421389 185 ntBASIC4.9□□□□□ -1.63
MSH4O15457 AC234779.1-201ENST00000425910 285 ntBASIC4.9□□□□□ -1.63
MSH4O15457 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC4.9□□□□□ -1.63
MSH4O15457 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC4.9□□□□□ -1.63
MSH4O15457 OR7L1P-201ENST00000456181 380 ntBASIC4.9□□□□□ -1.63
MSH4O15457 AC109327.1-201ENST00000471666 403 ntBASIC4.9□□□□□ -1.63
MSH4O15457 RN7SL691P-201ENST00000494487 301 ntBASIC4.9□□□□□ -1.63
MSH4O15457 AC106806.2-201ENST00000509365 500 ntBASIC4.9□□□□□ -1.63
MSH4O15457 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.9□□□□□ -1.63
MSH4O15457 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.9□□□□□ -1.63
MSH4O15457 AC005034.4-201ENST00000603612 899 ntBASIC4.9□□□□□ -1.63
MSH4O15457 AC091979.2-201ENST00000607514 214 ntBASIC4.9□□□□□ -1.63
MSH4O15457 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC4.9□□□□□ -1.63
MSH4O15457 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
MSH4O15457 AL139254.3-201ENST00000641097 674 ntBASIC4.9□□□□□ -1.63
MSH4O15457 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
MSH4O15457 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.9□□□□□ -1.63
MSH4O15457 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
MSH4O15457 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
MSH4O15457 MAPK10-304ENST00000641341 3984 ntBASIC4.9□□□□□ -1.63
MSH4O15457 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
MSH4O15457 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
MSH4O15457 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.89□□□□□ -1.63
MSH4O15457 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
MSH4O15457 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
MSH4O15457 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
MSH4O15457 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
MSH4O15457 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC4.89□□□□□ -1.63
MSH4O15457 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
MSH4O15457 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
MSH4O15457 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.89□□□□□ -1.63
MSH4O15457 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
MSH4O15457 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
MSH4O15457 NEAT1-202ENST00000501122 22743 ntBASIC4.89□□□□□ -1.63
MSH4O15457 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
MSH4O15457 RNU1-20P-201ENST00000363314 162 ntBASIC4.89□□□□□ -1.63
MSH4O15457 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.89□□□□□ -1.63
MSH4O15457 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
MSH4O15457 MFSD13B-201ENST00000420133 1290 ntBASIC4.89□□□□□ -1.63
MSH4O15457 ACTR3P2-201ENST00000439585 1257 ntBASIC4.89□□□□□ -1.63
MSH4O15457 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.89□□□□□ -1.63
MSH4O15457 FCF1P7-201ENST00000451185 558 ntBASIC4.89□□□□□ -1.63
MSH4O15457 AC239798.3-201ENST00000454459 408 ntBASIC4.89□□□□□ -1.63
MSH4O15457 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.89□□□□□ -1.63
MSH4O15457 RPL7P22-201ENST00000466005 733 ntBASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms