Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC4.84□□□□□ -1.63
PCDHGA1Q9Y5H4 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC4.84□□□□□ -1.63
PCDHGA1Q9Y5H4 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.84□□□□□ -1.63
PCDHGA1Q9Y5H4 AC020910.3-201ENST00000603701 874 ntBASIC4.84□□□□□ -1.63
PCDHGA1Q9Y5H4 AL355802.4-201ENST00000607635 548 ntBASIC4.84□□□□□ -1.63
PCDHGA1Q9Y5H4 AL356490.1-201ENST00000623079 479 ntBASIC4.84□□□□□ -1.63
PCDHGA1Q9Y5H4 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.84□□□□□ -1.63
PCDHGA1Q9Y5H4 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.84□□□□□ -1.63
PCDHGA1Q9Y5H4 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
PCDHGA1Q9Y5H4 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
PCDHGA1Q9Y5H4 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
PCDHGA1Q9Y5H4 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
PCDHGA1Q9Y5H4 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.64
PCDHGA1Q9Y5H4 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.84□□□□□ -1.64
PCDHGA1Q9Y5H4 THAP12P5-201ENST00000405864 2275 ntBASIC4.84□□□□□ -1.64
PCDHGA1Q9Y5H4 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.84□□□□□ -1.64
PCDHGA1Q9Y5H4 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.84□□□□□ -1.64
PCDHGA1Q9Y5H4 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC4.84□□□□□ -1.64
PCDHGA1Q9Y5H4 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 AC008079.2-201ENST00000623543 20396 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 RNU6-244P-201ENST00000391028 104 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 GPS2P1-201ENST00000411761 986 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 USP9YP19-201ENST00000412165 485 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 AC069213.2-201ENST00000420238 366 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 AC004074.1-201ENST00000421810 1063 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 AC009965.2-201ENST00000425328 970 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 NDUFB4P8-201ENST00000435351 367 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 AL691517.1-201ENST00000440833 1235 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 NOP56P2-201ENST00000447491 769 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 TCEA1P1-201ENST00000449716 880 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 SYT14P1-201ENST00000481459 721 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 AK3P4-201ENST00000504283 583 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 PGBD4P4-201ENST00000509673 613 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 HMGN1P9-201ENST00000515212 298 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 RN7SKP141-201ENST00000516167 338 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 RNU4ATAC18P-201ENST00000516179 126 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 RN7SKP276-201ENST00000516242 268 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 SMARCE1P4-201ENST00000523647 241 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 PDCD5P1-201ENST00000543528 309 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 AC068446.3-201ENST00000555285 382 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 AC011626.1-201ENST00000604710 562 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 AL162574.1-201ENST00000615702 950 ntBASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.83□□□□□ -1.64
PCDHGA1Q9Y5H4 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 KARSP3-201ENST00000571212 1504 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 AL022322.2-201ENST00000624072 20397 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 Z98755.1-201ENST00000407015 1384 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 RNA5SP191-201ENST00000362585 102 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 RN7SKP74-201ENST00000362849 309 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 RNU4-74P-201ENST00000411280 161 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 AC013404.1-201ENST00000413068 249 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 AL358176.3-201ENST00000420757 454 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 MTCO1P52-201ENST00000433928 531 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 AC090018.1-201ENST00000434369 367 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 AC017099.1-201ENST00000448261 1028 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 NFU1-207ENST00000462320 558 ntTSL 4 BASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 AC007537.2-201ENST00000472093 511 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 MTCO1P31-201ENST00000506355 492 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 133.3 ms