Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SHANK3Q9BYB0 OR11H4-201ENST00000315409 1082 ntBASIC5.59□□□□□ -1.51
SHANK3Q9BYB0 RNU11-4P-201ENST00000391149 133 ntBASIC5.59□□□□□ -1.51
SHANK3Q9BYB0 AL512326.1-201ENST00000443050 721 ntBASIC5.59□□□□□ -1.51
SHANK3Q9BYB0 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC5.59□□□□□ -1.51
SHANK3Q9BYB0 RNU6-352P-201ENST00000516908 107 ntBASIC5.59□□□□□ -1.51
SHANK3Q9BYB0 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC5.59□□□□□ -1.51
SHANK3Q9BYB0 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC5.59□□□□□ -1.51
SHANK3Q9BYB0 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC5.59□□□□□ -1.51
SHANK3Q9BYB0 AC091178.1-203ENST00000584586 279 ntBASIC5.59□□□□□ -1.51
SHANK3Q9BYB0 AL160290.3-201ENST00000604869 165 ntBASIC5.59□□□□□ -1.51
SHANK3Q9BYB0 AC025175.1-201ENST00000606482 759 ntBASIC5.59□□□□□ -1.51
SHANK3Q9BYB0 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
SHANK3Q9BYB0 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
SHANK3Q9BYB0 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
SHANK3Q9BYB0 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
SHANK3Q9BYB0 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.52
SHANK3Q9BYB0 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.52
SHANK3Q9BYB0 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.52
SHANK3Q9BYB0 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 SCARNA15-201ENST00000607520 4325 ntBASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 AP001157.1-201ENST00000550837 2339 ntBASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 RPL35AP15-201ENST00000468042 339 ntBASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 CAB39P1-201ENST00000502277 460 ntBASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 AP000432.2-201ENST00000624164 2048 ntBASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 NXPH1-205ENST00000602349 1953 ntBASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 HUWE1-203ENST00000342160 14796 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
SHANK3Q9BYB0 EED-206ENST00000527888 1422 ntTSL 2 BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 CASC19-284ENST00000642142 1868 ntBASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 AP000357.1-201ENST00000409926 1165 ntBASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 AC091286.1-201ENST00000431233 461 ntBASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 CYCSP32-201ENST00000440548 321 ntBASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 RPL5P32-201ENST00000454085 879 ntBASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 PPIAP15-201ENST00000479662 484 ntBASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 DUXAP2-201ENST00000519198 589 ntBASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 AC093591.2-201ENST00000565254 3843 ntBASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 RN7SKP182-201ENST00000410772 298 ntBASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 OR6C71P-201ENST00000432580 913 ntBASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 KCTD9P2-201ENST00000512203 1013 ntBASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 RNA5SP230-201ENST00000517039 122 ntBASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 AC120057.2-201ENST00000571520 271 ntBASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 KC877982.1-201ENST00000602313 470 ntBASIC5.57□□□□□ -1.52
SHANK3Q9BYB0 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SHANK3Q9BYB0 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
SHANK3Q9BYB0 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC5.56□□□□□ -1.52
SHANK3Q9BYB0 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
SHANK3Q9BYB0 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
SHANK3Q9BYB0 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SHANK3Q9BYB0 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SHANK3Q9BYB0 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC5.56□□□□□ -1.52
SHANK3Q9BYB0 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.56□□□□□ -1.52
SHANK3Q9BYB0 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SHANK3Q9BYB0 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
SHANK3Q9BYB0 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
SHANK3Q9BYB0 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5.56□□□□□ -1.52
SHANK3Q9BYB0 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SHANK3Q9BYB0 AC096664.2-201ENST00000411843 406 ntBASIC5.56□□□□□ -1.52
SHANK3Q9BYB0 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SHANK3Q9BYB0 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC5.56□□□□□ -1.52
SHANK3Q9BYB0 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms