Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC6.6□□□□□ -1.35
SCAPERQ9BY12 ENSAP1-201ENST00000392855 326 ntBASIC6.59□□□□□ -1.35
SCAPERQ9BY12 AC093578.1-201ENST00000415219 368 ntBASIC6.59□□□□□ -1.35
SCAPERQ9BY12 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC6.59□□□□□ -1.35
SCAPERQ9BY12 AC069157.1-201ENST00000421749 137 ntBASIC6.59□□□□□ -1.35
SCAPERQ9BY12 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC6.59□□□□□ -1.35
SCAPERQ9BY12 UBE2V1P3-201ENST00000439651 417 ntBASIC6.59□□□□□ -1.35
SCAPERQ9BY12 AL500522.2-201ENST00000448562 343 ntBASIC6.59□□□□□ -1.35
SCAPERQ9BY12 EIF2S2P5-201ENST00000457635 968 ntBASIC6.59□□□□□ -1.35
SCAPERQ9BY12 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC6.59□□□□□ -1.35
SCAPERQ9BY12 AL592156.1-201ENST00000508758 304 ntBASIC6.59□□□□□ -1.35
SCAPERQ9BY12 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SCAPERQ9BY12 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC6.59□□□□□ -1.35
SCAPERQ9BY12 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC6.59□□□□□ -1.35
SCAPERQ9BY12 RN7SL339P-201ENST00000580597 296 ntBASIC6.59□□□□□ -1.35
SCAPERQ9BY12 TEX41-300ENST00000631048 69 ntTSL 5 BASIC6.59□□□□□ -1.35
SCAPERQ9BY12 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.35
SCAPERQ9BY12 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
SCAPERQ9BY12 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
SCAPERQ9BY12 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
SCAPERQ9BY12 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SCAPERQ9BY12 AC008079.2-201ENST00000623543 20396 ntBASIC6.59□□□□□ -1.35
SCAPERQ9BY12 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SCAPERQ9BY12 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SCAPERQ9BY12 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
SCAPERQ9BY12 THAP12P5-201ENST00000405864 2275 ntBASIC6.59□□□□□ -1.35
SCAPERQ9BY12 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SCAPERQ9BY12 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC6.59□□□□□ -1.35
SCAPERQ9BY12 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
SCAPERQ9BY12 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC6.59□□□□□ -1.36
SCAPERQ9BY12 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC6.59□□□□□ -1.36
SCAPERQ9BY12 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC6.59□□□□□ -1.36
SCAPERQ9BY12 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC6.59□□□□□ -1.36
SCAPERQ9BY12 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC6.59□□□□□ -1.36
SCAPERQ9BY12 ALG13-211ENST00000473389 693 ntTSL 2 BASIC6.59□□□□□ -1.36
SCAPERQ9BY12 AC006363.1-201ENST00000603806 463 ntBASIC6.59□□□□□ -1.36
SCAPERQ9BY12 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC6.59□□□□□ -1.36
SCAPERQ9BY12 AC007546.1-201ENST00000619452 559 ntBASIC6.59□□□□□ -1.36
SCAPERQ9BY12 AL157762.1-201ENST00000619612 415 ntBASIC6.59□□□□□ -1.36
SCAPERQ9BY12 AC010608.2-201ENST00000624830 470 ntBASIC6.59□□□□□ -1.36
SCAPERQ9BY12 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
SCAPERQ9BY12 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SCAPERQ9BY12 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC6.58□□□□□ -1.36
SCAPERQ9BY12 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC6.58□□□□□ -1.36
SCAPERQ9BY12 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SCAPERQ9BY12 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SCAPERQ9BY12 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC6.58□□□□□ -1.36
SCAPERQ9BY12 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
SCAPERQ9BY12 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC6.58□□□□□ -1.36
SCAPERQ9BY12 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
SCAPERQ9BY12 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC6.58□□□□□ -1.36
SCAPERQ9BY12 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
SCAPERQ9BY12 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
SCAPERQ9BY12 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
SCAPERQ9BY12 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC6.58□□□□□ -1.36
SCAPERQ9BY12 YME1L1P1-201ENST00000429435 297 ntBASIC6.58□□□□□ -1.36
SCAPERQ9BY12 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC6.58□□□□□ -1.36
SCAPERQ9BY12 AC010374.1-201ENST00000503762 1237 ntBASIC6.58□□□□□ -1.36
SCAPERQ9BY12 DSTNP2-201ENST00000504533 515 ntBASIC6.58□□□□□ -1.36
SCAPERQ9BY12 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC6.58□□□□□ -1.36
SCAPERQ9BY12 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC6.58□□□□□ -1.36
SCAPERQ9BY12 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC6.58□□□□□ -1.36
SCAPERQ9BY12 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC6.58□□□□□ -1.36
SCAPERQ9BY12 OR7E10P-201ENST00000526420 991 ntBASIC6.58□□□□□ -1.36
SCAPERQ9BY12 MIR3936-201ENST00000584304 110 ntBASIC6.58□□□□□ -1.36
SCAPERQ9BY12 AC017100.2-201ENST00000584628 355 ntBASIC6.58□□□□□ -1.36
SCAPERQ9BY12 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SCAPERQ9BY12 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
SCAPERQ9BY12 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
SCAPERQ9BY12 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC6.57□□□□□ -1.36
SCAPERQ9BY12 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
SCAPERQ9BY12 AC092162.3-201ENST00000624511 1624 ntBASIC6.57□□□□□ -1.36
SCAPERQ9BY12 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC6.57□□□□□ -1.36
SCAPERQ9BY12 OFD1P5Y-201ENST00000447585 2590 ntBASIC6.57□□□□□ -1.36
SCAPERQ9BY12 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC6.57□□□□□ -1.36
SCAPERQ9BY12 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
SCAPERQ9BY12 USP45-204ENST00000369233 2514 ntTSL 5 BASIC6.57□□□□□ -1.36
SCAPERQ9BY12 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
SCAPERQ9BY12 AL355852.1-201ENST00000454081 1771 ntBASIC6.57□□□□□ -1.36
SCAPERQ9BY12 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
SCAPERQ9BY12 RN7SKP74-201ENST00000362849 309 ntBASIC6.57□□□□□ -1.36
SCAPERQ9BY12 AL512326.1-201ENST00000443050 721 ntBASIC6.57□□□□□ -1.36
SCAPERQ9BY12 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC6.57□□□□□ -1.36
SCAPERQ9BY12 AC090686.1-201ENST00000481577 749 ntBASIC6.57□□□□□ -1.36
SCAPERQ9BY12 AC020890.1-201ENST00000491837 504 ntBASIC6.57□□□□□ -1.36
SCAPERQ9BY12 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC6.57□□□□□ -1.36
SCAPERQ9BY12 RNA5SP497-201ENST00000516081 97 ntBASIC6.57□□□□□ -1.36
SCAPERQ9BY12 AC068993.1-201ENST00000546724 589 ntBASIC6.57□□□□□ -1.36
SCAPERQ9BY12 MIR4472-2-201ENST00000582069 67 ntBASIC6.57□□□□□ -1.36
SCAPERQ9BY12 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC6.57□□□□□ -1.36
SCAPERQ9BY12 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC6.57□□□□□ -1.36
SCAPERQ9BY12 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC6.56□□□□□ -1.36
SCAPERQ9BY12 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
SCAPERQ9BY12 AL592182.3-201ENST00000642132 3304 ntBASIC6.56□□□□□ -1.36
SCAPERQ9BY12 RNU11-4P-201ENST00000391149 133 ntBASIC6.56□□□□□ -1.36
SCAPERQ9BY12 TCEA1P4-201ENST00000415066 844 ntBASIC6.56□□□□□ -1.36
SCAPERQ9BY12 AL035246.1-201ENST00000433554 1255 ntBASIC6.56□□□□□ -1.36
SCAPERQ9BY12 ANK3-207ENST00000460468 677 ntTSL 3 BASIC6.56□□□□□ -1.36
SCAPERQ9BY12 RN7SL812P-201ENST00000493791 279 ntBASIC6.56□□□□□ -1.36
SCAPERQ9BY12 ENSA-211ENST00000503345 793 ntTSL 3 BASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms