Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
VPS39Q96JC1 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC4.76□□□□□ -1.65
VPS39Q96JC1 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
VPS39Q96JC1 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
VPS39Q96JC1 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
VPS39Q96JC1 AC093311.1-201ENST00000506586 2021 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS39Q96JC1 DDX18P4-201ENST00000511690 1966 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS39Q96JC1 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
VPS39Q96JC1 MIR765-201ENST00000390226 114 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS39Q96JC1 CHMP1B2P-201ENST00000399581 597 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 HSPD1P16-201ENST00000402302 394 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 RPS27AP11-201ENST00000402798 447 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 AMZ2P2-201ENST00000406819 1057 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 RN7SKP213-201ENST00000410746 298 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 Z68694.1-201ENST00000413929 841 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 AC093162.1-201ENST00000419682 124 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 AL645608.4-201ENST00000423619 154 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 FABP7P1-201ENST00000424004 391 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS39Q96JC1 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS39Q96JC1 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS39Q96JC1 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS39Q96JC1 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS39Q96JC1 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.75□□□□□ -1.65
VPS39Q96JC1 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC4.75□□□□□ -1.65
VPS39Q96JC1 RPL7P48-201ENST00000461513 746 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 RPL23AP37-201ENST00000479658 549 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 MTND3P6-201ENST00000485242 339 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS39Q96JC1 RPS4XP18-201ENST00000495480 763 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 AC113430.1-201ENST00000506872 718 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 FABP5P6-201ENST00000510588 409 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS39Q96JC1 LECT2-205ENST00000522943 574 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS39Q96JC1 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS39Q96JC1 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS39Q96JC1 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC4.75□□□□□ -1.65
VPS39Q96JC1 RN7SL802P-201ENST00000577858 299 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS39Q96JC1 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.75□□□□□ -1.65
VPS39Q96JC1 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS39Q96JC1 AC020910.3-201ENST00000603701 874 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 COX6CP4-201ENST00000605798 228 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS39Q96JC1 AC084036.1-201ENST00000609190 508 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 AC007497.1-201ENST00000610421 561 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 AC116563.2-201ENST00000624751 535 ntBASIC4.75□□□□□ -1.65
VPS39Q96JC1 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS39Q96JC1 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS39Q96JC1 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
VPS39Q96JC1 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.75□□□□□ -1.65
VPS39Q96JC1 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS39Q96JC1 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS39Q96JC1 OR14L1P-202ENST00000641545 3009 ntBASIC4.74□□□□□ -1.65
VPS39Q96JC1 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS39Q96JC1 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS39Q96JC1 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
VPS39Q96JC1 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS39Q96JC1 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS39Q96JC1 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
VPS39Q96JC1 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS39Q96JC1 RNA5SP507-201ENST00000363603 121 ntBASIC4.74□□□□□ -1.65
VPS39Q96JC1 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS39Q96JC1 SNORD96B-201ENST00000386148 79 ntBASIC4.74□□□□□ -1.65
VPS39Q96JC1 U3.30-201ENST00000391308 210 ntBASIC4.74□□□□□ -1.65
VPS39Q96JC1 GAPDHP49-201ENST00000421421 961 ntBASIC4.74□□□□□ -1.65
VPS39Q96JC1 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS39Q96JC1 AC073850.1-201ENST00000449243 255 ntBASIC4.74□□□□□ -1.65
VPS39Q96JC1 AC234781.3-201ENST00000452540 973 ntBASIC4.74□□□□□ -1.65
VPS39Q96JC1 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS39Q96JC1 AC011037.1-201ENST00000483964 558 ntBASIC4.74□□□□□ -1.65
VPS39Q96JC1 RNU1-6P-201ENST00000516290 144 ntBASIC4.74□□□□□ -1.65
VPS39Q96JC1 RNU6-1004P-201ENST00000516584 111 ntBASIC4.74□□□□□ -1.65
VPS39Q96JC1 BUD31P1-201ENST00000521828 359 ntBASIC4.74□□□□□ -1.65
VPS39Q96JC1 AC022882.1-201ENST00000532142 501 ntBASIC4.74□□□□□ -1.65
VPS39Q96JC1 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.74□□□□□ -1.65
VPS39Q96JC1 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS39Q96JC1 DYNLL1P4-201ENST00000549314 266 ntBASIC4.74□□□□□ -1.65
VPS39Q96JC1 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC4.74□□□□□ -1.65
VPS39Q96JC1 MIR5699-201ENST00000578903 90 ntBASIC4.74□□□□□ -1.65
VPS39Q96JC1 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC4.74□□□□□ -1.65
VPS39Q96JC1 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS39Q96JC1 SDR42E1P1-201ENST00000611327 477 ntBASIC4.74□□□□□ -1.65
VPS39Q96JC1 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
VPS39Q96JC1 AL359757.1-201ENST00000623176 255 ntBASIC4.74□□□□□ -1.65
VPS39Q96JC1 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC4.74□□□□□ -1.65
VPS39Q96JC1 OR2L1P-202ENST00000641567 1023 ntBASIC4.74□□□□□ -1.65
VPS39Q96JC1 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.74□□□□□ -1.65
VPS39Q96JC1 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS39Q96JC1 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.74□□□□□ -1.65
VPS39Q96JC1 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
VPS39Q96JC1 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.74□□□□□ -1.65
VPS39Q96JC1 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS39Q96JC1 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS39Q96JC1 CCT8P1-201ENST00000413611 1657 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 AP001273.1-201ENST00000624493 3152 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms