Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC2.6□□□□□ -1.99
HSPG2P98160 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC2.6□□□□□ -1.99
HSPG2P98160 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HSPG2P98160 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
HSPG2P98160 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
HSPG2P98160 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC2.6□□□□□ -1.99
HSPG2P98160 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HSPG2P98160 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HSPG2P98160 NIPBL-201ENST00000282516 10435 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HSPG2P98160 DOCK8-204ENST00000432829 7452 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HSPG2P98160 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
HSPG2P98160 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC2.6□□□□□ -1.99
HSPG2P98160 ALMS1-204ENST00000484298 12595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
HSPG2P98160 DDX18P6-201ENST00000450119 1997 ntBASIC2.6□□□□□ -1.99
HSPG2P98160 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
HSPG2P98160 EED-206ENST00000527888 1422 ntTSL 2 BASIC2.6□□□□□ -1.99
HSPG2P98160 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
HSPG2P98160 RNU1-63P-201ENST00000383902 164 ntBASIC2.6□□□□□ -1.99
HSPG2P98160 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HSPG2P98160 AL139247.1-201ENST00000422768 325 ntBASIC2.6□□□□□ -1.99
HSPG2P98160 AC008155.2-201ENST00000464337 397 ntBASIC2.6□□□□□ -1.99
HSPG2P98160 RPL23AP37-201ENST00000479658 549 ntBASIC2.6□□□□□ -1.99
HSPG2P98160 AL139099.1-201ENST00000497398 403 ntBASIC2.6□□□□□ -1.99
HSPG2P98160 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC2.6□□□□□ -1.99
HSPG2P98160 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC2.6□□□□□ -1.99
HSPG2P98160 COBLL1-203ENST00000392717 9523 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
HSPG2P98160 PLEKHM3-202ENST00000427836 9807 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
HSPG2P98160 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC2.6□□□□□ -1.99
HSPG2P98160 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
HSPG2P98160 AC123769.2-201ENST00000624332 5984 ntBASIC2.6□□□□□ -1.99
HSPG2P98160 AC009229.4-201ENST00000623854 1947 ntBASIC2.6□□□□□ -1.99
HSPG2P98160 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HSPG2P98160 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
HSPG2P98160 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HSPG2P98160 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HSPG2P98160 U1.1-201ENST00000384101 164 ntBASIC2.6□□□□□ -1.99
HSPG2P98160 HNRNPA1P29-201ENST00000426409 879 ntBASIC2.6□□□□□ -1.99
HSPG2P98160 AL512649.1-201ENST00000428997 581 ntBASIC2.6□□□□□ -1.99
HSPG2P98160 AC025518.1-201ENST00000479856 347 ntBASIC2.6□□□□□ -1.99
HSPG2P98160 RNU1-30P-201ENST00000606575 163 ntBASIC2.6□□□□□ -1.99
HSPG2P98160 AC233263.6-201ENST00000631132 1963 ntBASIC2.6□□□□□ -1.99
HSPG2P98160 AC015813.6-201ENST00000624409 5808 ntBASIC2.6□□□□□ -1.99
HSPG2P98160 MAPK10-328ENST00000641553 4009 ntBASIC2.6□□□□□ -1.99
HSPG2P98160 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
HSPG2P98160 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HSPG2P98160 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HSPG2P98160 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
HSPG2P98160 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HSPG2P98160 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC2.59□□□□□ -1.99
HSPG2P98160 AC116667.1-201ENST00000604855 2072 ntBASIC2.59□□□□□ -1.99
HSPG2P98160 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC2.59□□□□□ -1.99
HSPG2P98160 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
HSPG2P98160 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC2.59□□□□□ -1.99
HSPG2P98160 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC2.59□□□□□ -1.99
HSPG2P98160 AC023271.1-201ENST00000445936 1090 ntBASIC2.59□□□□□ -1.99
HSPG2P98160 RPS4XP10-201ENST00000465034 731 ntBASIC2.59□□□□□ -1.99
HSPG2P98160 RN7SKP289-201ENST00000517244 295 ntBASIC2.59□□□□□ -1.99
HSPG2P98160 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
HSPG2P98160 MTCO3P22-201ENST00000603219 784 ntBASIC2.59□□□□□ -1.99
HSPG2P98160 AL645927.2-201ENST00000618350 349 ntBASIC2.59□□□□□ -1.99
HSPG2P98160 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC2.59□□□□□ -1.99
HSPG2P98160 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC2.59□□□□□ -1.99
HSPG2P98160 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
HSPG2P98160 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC2.59□□□□□ -1.99
HSPG2P98160 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
HSPG2P98160 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
HSPG2P98160 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
HSPG2P98160 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
HSPG2P98160 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC2.59□□□□□ -1.99
HSPG2P98160 SNORA57.3-201ENST00000411095 141 ntBASIC2.59□□□□□ -1.99
HSPG2P98160 CTSL3P-202ENST00000412179 788 ntBASIC2.59□□□□□ -1.99
HSPG2P98160 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
HSPG2P98160 AL157385.1-201ENST00000446973 268 ntBASIC2.59□□□□□ -1.99
HSPG2P98160 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC2.59□□□□□ -1.99
HSPG2P98160 RPL35AP15-201ENST00000468042 339 ntBASIC2.59□□□□□ -1.99
HSPG2P98160 UBE2CP3-201ENST00000502715 450 ntBASIC2.59□□□□□ -1.99
HSPG2P98160 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC2.59□□□□□ -1.99
HSPG2P98160 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC2.59□□□□□ -1.99
HSPG2P98160 CR392039.4-201ENST00000624968 501 ntBASIC2.59□□□□□ -1.99
HSPG2P98160 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
HSPG2P98160 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC2.59□□□□□ -1.99
HSPG2P98160 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC2.59□□□□□ -1.99
HSPG2P98160 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC2.59□□□□□ -1.99
HSPG2P98160 CHD8-201ENST00000399982 8229 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
HSPG2P98160 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
HSPG2P98160 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
HSPG2P98160 AL035425.3-201ENST00000564206 4996 ntBASIC2.59□□□□□ -1.99
HSPG2P98160 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC2.59□□□□□ -1.99
HSPG2P98160 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
HSPG2P98160 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
HSPG2P98160 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC2.59□□□□□ -2
HSPG2P98160 Z82217.1-201ENST00000625157 8149 ntBASIC2.59□□□□□ -2
HSPG2P98160 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC2.59□□□□□ -2
HSPG2P98160 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC2.59□□□□□ -2
HSPG2P98160 AC017083.1-201ENST00000428093 483 ntBASIC2.59□□□□□ -2
HSPG2P98160 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC2.59□□□□□ -2
HSPG2P98160 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC2.59□□□□□ -2
HSPG2P98160 ATP1B1P1-201ENST00000509767 915 ntBASIC2.59□□□□□ -2
HSPG2P98160 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC2.59□□□□□ -2
HSPG2P98160 MRPS21P9-201ENST00000571150 257 ntBASIC2.59□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 128.4 ms