Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
RNF4P78317 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
RNF4P78317 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC5.95□□□□□ -1.46
RNF4P78317 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
RNF4P78317 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC5.95□□□□□ -1.46
RNF4P78317 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC5.95□□□□□ -1.46
RNF4P78317 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC5.94□□□□□ -1.46
RNF4P78317 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
RNF4P78317 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.94□□□□□ -1.46
RNF4P78317 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
RNF4P78317 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
RNF4P78317 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
RNF4P78317 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
RNF4P78317 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC5.94□□□□□ -1.46
RNF4P78317 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
RNF4P78317 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC5.94□□□□□ -1.46
RNF4P78317 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
RNF4P78317 AXDND1-214ENST00000617277 3405 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
RNF4P78317 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC5.94□□□□□ -1.46
RNF4P78317 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
RNF4P78317 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC5.94□□□□□ -1.46
RNF4P78317 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
RNF4P78317 Y_RNA.61-201ENST00000362835 102 ntBASIC5.94□□□□□ -1.46
RNF4P78317 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
RNF4P78317 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
RNF4P78317 ERMN-204ENST00000409925 556 ntTSL 4 BASIC5.94□□□□□ -1.46
RNF4P78317 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC5.94□□□□□ -1.46
RNF4P78317 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.94□□□□□ -1.46
RNF4P78317 C1DP2-201ENST00000418167 426 ntBASIC5.94□□□□□ -1.46
RNF4P78317 AC234781.4-201ENST00000419384 244 ntBASIC5.94□□□□□ -1.46
RNF4P78317 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.94□□□□□ -1.46
RNF4P78317 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.94□□□□□ -1.46
RNF4P78317 PRUNEP1-201ENST00000425846 705 ntBASIC5.94□□□□□ -1.46
RNF4P78317 NIPA2P1-201ENST00000426223 976 ntBASIC5.94□□□□□ -1.46
RNF4P78317 RPL7P56-201ENST00000429441 717 ntBASIC5.94□□□□□ -1.46
RNF4P78317 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC5.94□□□□□ -1.46
RNF4P78317 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC5.94□□□□□ -1.46
RNF4P78317 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
RNF4P78317 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC5.94□□□□□ -1.46
RNF4P78317 AL451074.3-201ENST00000437709 472 ntBASIC5.94□□□□□ -1.46
RNF4P78317 AC073614.1-201ENST00000438690 650 ntBASIC5.94□□□□□ -1.46
RNF4P78317 RAB11AP1-201ENST00000442978 646 ntBASIC5.94□□□□□ -1.46
RNF4P78317 RPL23AP71-201ENST00000470966 469 ntBASIC5.94□□□□□ -1.46
RNF4P78317 NPM1P27-201ENST00000502784 830 ntBASIC5.94□□□□□ -1.46
RNF4P78317 AC108078.1-201ENST00000508073 725 ntBASIC5.94□□□□□ -1.46
RNF4P78317 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC5.94□□□□□ -1.46
RNF4P78317 SNORA20.3-201ENST00000516880 132 ntBASIC5.94□□□□□ -1.46
RNF4P78317 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC5.94□□□□□ -1.46
RNF4P78317 LY96-202ENST00000518893 430 ntTSL 3 BASIC5.94□□□□□ -1.46
RNF4P78317 IGKV1D-22-201ENST00000518953 324 ntBASIC5.94□□□□□ -1.46
RNF4P78317 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC5.94□□□□□ -1.46
RNF4P78317 AC013828.2-201ENST00000532487 235 ntBASIC5.94□□□□□ -1.46
RNF4P78317 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC5.94□□□□□ -1.46
RNF4P78317 OLR1-209ENST00000543993 822 ntTSL 2 BASIC5.94□□□□□ -1.46
RNF4P78317 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC5.94□□□□□ -1.46
RNF4P78317 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC5.94□□□□□ -1.46
RNF4P78317 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC5.94□□□□□ -1.46
RNF4P78317 DYNLL1P1-201ENST00000595442 269 ntBASIC5.94□□□□□ -1.46
RNF4P78317 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC5.94□□□□□ -1.46
RNF4P78317 AC009779.8-202ENST00000607990 932 ntBASIC5.94□□□□□ -1.46
RNF4P78317 AC104260.1-201ENST00000616660 539 ntBASIC5.94□□□□□ -1.46
RNF4P78317 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
RNF4P78317 AC004009.2-201ENST00000623016 728 ntBASIC5.94□□□□□ -1.46
RNF4P78317 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC5.94□□□□□ -1.46
RNF4P78317 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
RNF4P78317 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
RNF4P78317 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
RNF4P78317 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC5.94□□□□□ -1.46
RNF4P78317 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
RNF4P78317 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
RNF4P78317 AL662795.2-201ENST00000624252 3706 ntBASIC5.94□□□□□ -1.46
RNF4P78317 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
RNF4P78317 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
RNF4P78317 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
RNF4P78317 KYNUP3-201ENST00000574386 1341 ntBASIC5.94□□□□□ -1.46
RNF4P78317 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
RNF4P78317 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC5.94□□□□□ -1.46
RNF4P78317 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
RNF4P78317 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
RNF4P78317 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC5.94□□□□□ -1.46
RNF4P78317 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
RNF4P78317 WDR95P-201ENST00000425638 1542 ntBASIC5.94□□□□□ -1.46
RNF4P78317 MTND4P12-201ENST00000498999 1377 ntBASIC5.93□□□□□ -1.46
RNF4P78317 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC5.93□□□□□ -1.46
RNF4P78317 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
RNF4P78317 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC5.93□□□□□ -1.46
RNF4P78317 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC5.93□□□□□ -1.46
RNF4P78317 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
RNF4P78317 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
RNF4P78317 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
RNF4P78317 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
RNF4P78317 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
RNF4P78317 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
RNF4P78317 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
RNF4P78317 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
RNF4P78317 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC5.93□□□□□ -1.46
RNF4P78317 RNU6-1090P-201ENST00000364065 94 ntBASIC5.93□□□□□ -1.46
RNF4P78317 AC104297.1-201ENST00000393779 870 ntBASIC5.93□□□□□ -1.46
RNF4P78317 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC5.93□□□□□ -1.46
RNF4P78317 SMARCE1P6-201ENST00000398372 1216 ntBASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms