Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 BRDT-204ENST00000394530 3207 ntTSL 2 BASIC7.59□□□□□ -1.19
COL9A1P20849 AC006305.1-201ENST00000382897 2558 ntTSL 2 BASIC7.59□□□□□ -1.19
COL9A1P20849 RNU6-774P-201ENST00000363238 107 ntBASIC7.59□□□□□ -1.19
COL9A1P20849 Y_RNA.424-201ENST00000384063 103 ntBASIC7.59□□□□□ -1.19
COL9A1P20849 SNORA7A-201ENST00000384765 139 ntBASIC7.59□□□□□ -1.19
COL9A1P20849 AL593856.1-201ENST00000419949 805 ntBASIC7.59□□□□□ -1.19
COL9A1P20849 AC096632.1-201ENST00000427395 310 ntBASIC7.59□□□□□ -1.19
COL9A1P20849 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC7.59□□□□□ -1.19
COL9A1P20849 RPL36AP15-201ENST00000444514 266 ntBASIC7.59□□□□□ -1.19
COL9A1P20849 AC005008.1-201ENST00000456151 612 ntBASIC7.59□□□□□ -1.19
COL9A1P20849 PRELID3BP1-201ENST00000457142 540 ntBASIC7.59□□□□□ -1.19
COL9A1P20849 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC7.59□□□□□ -1.19
COL9A1P20849 AC015820.1-201ENST00000473882 321 ntBASIC7.59□□□□□ -1.19
COL9A1P20849 RN7SL70P-201ENST00000478322 302 ntBASIC7.59□□□□□ -1.19
COL9A1P20849 RN7SL629P-201ENST00000489622 285 ntBASIC7.59□□□□□ -1.19
COL9A1P20849 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC7.59□□□□□ -1.19
COL9A1P20849 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC7.59□□□□□ -1.19
COL9A1P20849 COX6B1P6-201ENST00000522347 255 ntBASIC7.59□□□□□ -1.19
COL9A1P20849 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC7.59□□□□□ -1.19
COL9A1P20849 LSM3P2-201ENST00000551246 273 ntBASIC7.59□□□□□ -1.19
COL9A1P20849 AC023968.1-201ENST00000560719 475 ntBASIC7.59□□□□□ -1.19
COL9A1P20849 RN7SL667P-201ENST00000582817 298 ntBASIC7.59□□□□□ -1.19
COL9A1P20849 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
COL9A1P20849 C4orf46-202ENST00000508457 3358 ntTSL 5 BASIC7.59□□□□□ -1.19
COL9A1P20849 RIPOR2-205ENST00000510784 3381 ntTSL 2 BASIC7.59□□□□□ -1.19
COL9A1P20849 MCM6-201ENST00000264156 3736 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
COL9A1P20849 CAST-204ENST00000341926 2487 ntAPPRIS ALT2 TSL 1 (best) BASIC7.59□□□□□ -1.19
COL9A1P20849 ALDH6A1-202ENST00000553458 5499 ntAPPRIS P3 TSL 1 (best) BASIC7.59□□□□□ -1.19
COL9A1P20849 ZNF320-201ENST00000391781 6074 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
COL9A1P20849 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC7.59□□□□□ -1.19
COL9A1P20849 CA1-225ENST00000626824 2405 ntTSL 5 BASIC7.59□□□□□ -1.19
COL9A1P20849 PDCD6IP-201ENST00000307296 6161 ntAPPRIS P3 TSL 1 (best) BASIC7.59□□□□□ -1.2
COL9A1P20849 LINC02367-201ENST00000567749 4388 ntTSL 1 (best) BASIC7.59□□□□□ -1.2
COL9A1P20849 HHAT-204ENST00000413764 3575 ntAPPRIS P1 TSL 5 BASIC7.59□□□□□ -1.2
COL9A1P20849 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC7.59□□□□□ -1.2
COL9A1P20849 UMAD1-206ENST00000636849 2157 ntAPPRIS P1 TSL 5 BASIC7.59□□□□□ -1.2
COL9A1P20849 DUXAP8-204ENST00000447898 4136 ntTSL 1 (best) BASIC7.59□□□□□ -1.2
COL9A1P20849 FBXO36-202ENST00000373652 3120 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
COL9A1P20849 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
COL9A1P20849 CD86-202ENST00000330540 2708 ntAPPRIS P3 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL9A1P20849 OR4F15-201ENST00000332238 2119 ntAPPRIS P1 BASIC7.58□□□□□ -1.2
COL9A1P20849 CHD2-201ENST00000394196 9363 ntAPPRIS P1 TSL 5 BASIC7.58□□□□□ -1.2
COL9A1P20849 L1TD1-201ENST00000498273 3849 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL9A1P20849 CEP57L1-214ENST00000521277 3832 ntTSL 2 BASIC7.58□□□□□ -1.2
COL9A1P20849 IGFN1-202ENST00000335211 11810 ntAPPRIS P2 TSL 5 BASIC7.58□□□□□ -1.2
COL9A1P20849 LY75-CD302-202ENST00000505052 5482 ntAPPRIS ALT2 TSL 2 BASIC7.58□□□□□ -1.2
COL9A1P20849 ESRRG-222ENST00000493748 2074 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL9A1P20849 ATXN3-203ENST00000393287 6770 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
COL9A1P20849 TRIM16-202ENST00000416464 3184 ntTSL 2 BASIC7.58□□□□□ -1.2
COL9A1P20849 CCNT2-202ENST00000295238 4491 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
COL9A1P20849 CACNB4-219ENST00000636108 1698 ntTSL 5 BASIC7.58□□□□□ -1.2
COL9A1P20849 AC006269.1-201ENST00000636752 2789 ntAPPRIS P1 TSL 5 BASIC7.58□□□□□ -1.2
COL9A1P20849 PRICKLE2-205ENST00000638394 9956 ntAPPRIS P2 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL9A1P20849 KPNA2P2-201ENST00000419546 1489 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 AC011755.1-201ENST00000623763 2049 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL9A1P20849 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL9A1P20849 RN7SKP36-201ENST00000363997 312 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 Y_RNA.210-201ENST00000364161 110 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 CARD17-201ENST00000375707 466 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL9A1P20849 Y_RNA.562-201ENST00000384695 113 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 EIF4E2P1-201ENST00000393781 255 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 RPSAP35-201ENST00000413753 818 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 AC048351.1-201ENST00000420064 602 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 AC243428.1-201ENST00000421099 264 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC7.58□□□□□ -1.2
COL9A1P20849 AC007679.3-201ENST00000434035 414 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 RPL7P28-201ENST00000437739 740 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 AL445466.1-201ENST00000448432 357 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC7.58□□□□□ -1.2
COL9A1P20849 RPL39P38-201ENST00000467018 153 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 AL161747.1-201ENST00000480068 358 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 RPL23AP72-201ENST00000492447 435 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC7.58□□□□□ -1.2
COL9A1P20849 HSD3BP3-201ENST00000514706 994 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC7.58□□□□□ -1.2
COL9A1P20849 Y_RNA.708-201ENST00000516950 96 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 RN7SKP283-201ENST00000517197 270 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 IGHVIII-67-3-201ENST00000517650 232 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 AF279873.1-201ENST00000523393 313 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 OR5D17P-201ENST00000531492 978 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 MGST1-215ENST00000540056 546 ntTSL 3 BASIC7.58□□□□□ -1.2
COL9A1P20849 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC7.58□□□□□ -1.2
COL9A1P20849 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC7.58□□□□□ -1.2
COL9A1P20849 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC7.58□□□□□ -1.2
COL9A1P20849 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC7.58□□□□□ -1.2
COL9A1P20849 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC7.58□□□□□ -1.2
COL9A1P20849 AC092032.1-201ENST00000603090 165 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 AC092447.9-201ENST00000603395 144 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC7.58□□□□□ -1.2
COL9A1P20849 MIR6748-201ENST00000610433 71 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 AL627230.1-201ENST00000613077 211 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 AC089999.3-201ENST00000622440 577 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC7.58□□□□□ -1.2
COL9A1P20849 HDAC1P1-201ENST00000455482 1445 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 SLC39A12-204ENST00000539911 2461 ntTSL 2 BASIC7.58□□□□□ -1.2
COL9A1P20849 SPATS2L-201ENST00000358677 6156 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL9A1P20849 AC091812.1-201ENST00000432235 1948 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 AL590004.4-201ENST00000566733 7060 ntBASIC7.58□□□□□ -1.2
COL9A1P20849 ZNF878-201ENST00000547628 1734 ntAPPRIS P1 TSL 3 BASIC7.58□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms