Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AC108751.5-201ENST00000492880 1336 ntBASIC4.63□□□□□ -1.67
LHX3Q9UBR4 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 OR56B2P-202ENST00000641377 2453 ntBASIC4.63□□□□□ -1.67
LHX3Q9UBR4 VN2R3P-201ENST00000422626 1412 ntBASIC4.63□□□□□ -1.67
LHX3Q9UBR4 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 RNU4-39P-201ENST00000362455 127 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 RPS4XP9-201ENST00000405151 780 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 EIF4A1P1-201ENST00000420241 934 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 RSL24D1P8-201ENST00000434442 492 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 CACYBPP1-201ENST00000438592 684 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 AL162591.2-201ENST00000449634 317 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 AL513343.1-201ENST00000451818 792 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 AK3P4-201ENST00000504283 583 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 RN7SKP92-201ENST00000517266 244 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 OR10D4P-201ENST00000525892 951 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 AC084783.1-201ENST00000565846 910 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 AP005119.2-201ENST00000579735 1105 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 RPL12P25-202ENST00000598100 674 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 AC115286.1-201ENST00000604298 434 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 COX6CP4-201ENST00000605798 228 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 AC135803.1-201ENST00000608748 565 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 AL136295.6-201ENST00000610486 658 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 AL133243.1-201ENST00000614487 366 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 AL162233.1-201ENST00000620014 944 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 AC079298.2-201ENST00000623885 459 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 AP003499.2-201ENST00000624100 483 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 AC026523.2-201ENST00000625039 7739 ntBASIC4.62□□□□□ -1.67
LHX3Q9UBR4 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
LHX3Q9UBR4 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 AC093849.1-201ENST00000563631 2209 ntBASIC4.61□□□□□ -1.67
LHX3Q9UBR4 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 AL022322.2-201ENST00000624072 20397 ntBASIC4.61□□□□□ -1.67
LHX3Q9UBR4 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 RNU6-883P-201ENST00000384597 107 ntBASIC4.61□□□□□ -1.67
LHX3Q9UBR4 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 RPL7AP25-201ENST00000423357 805 ntBASIC4.61□□□□□ -1.67
LHX3Q9UBR4 CENPIP1-201ENST00000425713 902 ntBASIC4.61□□□□□ -1.67
LHX3Q9UBR4 AP001324.1-201ENST00000428553 399 ntBASIC4.61□□□□□ -1.67
LHX3Q9UBR4 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 AL031584.1-201ENST00000447169 754 ntBASIC4.61□□□□□ -1.67
LHX3Q9UBR4 MTND2P3-201ENST00000452458 470 ntBASIC4.61□□□□□ -1.67
LHX3Q9UBR4 CYCSP34-201ENST00000458172 304 ntBASIC4.61□□□□□ -1.67
LHX3Q9UBR4 AC108751.2-201ENST00000469993 231 ntBASIC4.61□□□□□ -1.67
LHX3Q9UBR4 RPL7AP10-201ENST00000481016 791 ntBASIC4.61□□□□□ -1.67
LHX3Q9UBR4 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 MIR4715-201ENST00000584117 79 ntBASIC4.61□□□□□ -1.67
LHX3Q9UBR4 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 AC015871.5-202ENST00000623252 701 ntBASIC4.61□□□□□ -1.67
LHX3Q9UBR4 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.61□□□□□ -1.67
LHX3Q9UBR4 AL133268.1-201ENST00000405676 1401 ntBASIC4.61□□□□□ -1.67
LHX3Q9UBR4 DDX6P1-205ENST00000441966 1436 ntBASIC4.61□□□□□ -1.67
LHX3Q9UBR4 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 128.4 ms