Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 AC007068.1-201ENST00000396690 844 ntBASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 FCF1P5-201ENST00000406490 482 ntBASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 AC062016.2-201ENST00000420950 676 ntBASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 AC022336.1-201ENST00000475510 337 ntBASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 AF213884.1-201ENST00000488102 463 ntBASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 PRELID3BP6-201ENST00000503839 571 ntBASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 AL121772.2-201ENST00000614331 297 ntBASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 AL138721.1-201ENST00000616756 179 ntBASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 AC007546.2-201ENST00000623996 360 ntBASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 AL022323.4-201ENST00000623980 13120 ntBASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 AC239868.2-201ENST00000564237 4527 ntBASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 AC115285.1-201ENST00000424879 736 ntBASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 AC004938.1-201ENST00000438468 308 ntBASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 ABCF2P2-201ENST00000450549 296 ntBASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 AC093815.1-201ENST00000508637 280 ntBASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 DYNLL1P4-201ENST00000549314 266 ntBASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 RPL23AP97-201ENST00000568955 471 ntBASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 DMD-205ENST00000359836 7339 ntTSL 5 BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
SHANK3Q9BYB0 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 AC112230.1-201ENST00000604342 547 ntBASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 AL442067.2-201ENST00000614033 363 ntBASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 AC015967.1-201ENST00000619893 476 ntBASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 AC112484.5-201ENST00000624189 228 ntBASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 ENSAP1-201ENST00000392855 326 ntBASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 RN7SL812P-201ENST00000493791 279 ntBASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 AC026403.1-201ENST00000518938 295 ntBASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 IMMP1LP1-201ENST00000605170 488 ntBASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 AC099669.2-201ENST00000616549 437 ntBASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 AC009093.8-201ENST00000641769 292 ntBASIC5.6□□□□□ -1.51
SHANK3Q9BYB0 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SHANK3Q9BYB0 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SHANK3Q9BYB0 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.59□□□□□ -1.51
SHANK3Q9BYB0 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
SHANK3Q9BYB0 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SHANK3Q9BYB0 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
SHANK3Q9BYB0 AC068870.3-201ENST00000625077 2536 ntBASIC5.59□□□□□ -1.51
SHANK3Q9BYB0 AC011755.1-201ENST00000623763 2049 ntBASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms