Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
TRAIPQ9BWF2 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC7.07□□□□□ -1.28
TRAIPQ9BWF2 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
TRAIPQ9BWF2 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC7.07□□□□□ -1.28
TRAIPQ9BWF2 ELL2P4-201ENST00000446870 1376 ntBASIC7.07□□□□□ -1.28
TRAIPQ9BWF2 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
TRAIPQ9BWF2 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 RNU6-1243P-201ENST00000364028 107 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 RNU6-1226P-201ENST00000384317 107 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AL024474.1-201ENST00000404655 591 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 UBTFL3-201ENST00000418934 1024 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC007679.3-201ENST00000434035 414 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 SKP1P1-201ENST00000438081 489 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AMYP1-201ENST00000440059 1023 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 RPL5P7-201ENST00000444235 813 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC128716.1-201ENST00000475129 166 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 UBTFL6-201ENST00000477929 1024 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 RPL7P16-201ENST00000479738 738 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 RNF138P1-201ENST00000502765 546 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 KHDC1P1-201ENST00000511053 508 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 HSPA8P13-201ENST00000523715 472 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC013828.2-201ENST00000532487 235 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC036111.2-201ENST00000533247 901 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 MYL2-203ENST00000548438 664 ntTSL 3 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC091489.2-201ENST00000566263 604 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 MIR4512-201ENST00000583257 77 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC124916.2-201ENST00000604416 224 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC005332.10-201ENST00000612725 619 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC027807.2-201ENST00000616099 408 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC138932.5-201ENST00000617759 563 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC009509.4-201ENST00000619202 509 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC018755.4-201ENST00000619715 454 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 OFD1P15Y-201ENST00000411536 1392 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 HSPA8P14-201ENST00000552265 1805 ntBASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
TRAIPQ9BWF2 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 GDI2P1-201ENST00000429312 1336 ntBASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 AC235565.1-201ENST00000456962 1325 ntBASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 AC010168.2-201ENST00000562691 5428 ntBASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 RPL23AP57-201ENST00000332361 466 ntBASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 NPM1P18-201ENST00000434232 732 ntBASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 PABPC1P3-201ENST00000469174 459 ntBASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 AC024589.1-201ENST00000512207 263 ntBASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 AF131216.2-201ENST00000512316 564 ntBASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 ZNF519P4-201ENST00000514008 125 ntBASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 RNA5SP441-201ENST00000516809 88 ntBASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC7.05□□□□□ -1.28
TRAIPQ9BWF2 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC7.05□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms