Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC019193.2-201ENST00000610012 634 ntBASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 AL049794.2-201ENST00000616301 365 ntBASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 MIR1264-201ENST00000616374 69 ntBASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 MIR6853-201ENST00000619642 74 ntBASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 Z98755.1-201ENST00000407015 1384 ntBASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 UGT2B26P-201ENST00000508672 1613 ntBASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.75□□□□□ -1.65
CCDC3Q9BQI4 WAC-209ENST00000428935 1320 ntTSL 2 BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC010928.1-201ENST00000592477 1447 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC004817.4-201ENST00000602396 3625 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC017079.1-201ENST00000333650 415 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 RPS3AP23-201ENST00000401762 784 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 ARL2BPP3-201ENST00000421226 480 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AL121882.1-201ENST00000422893 417 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 UBE2V1P6-201ENST00000430840 422 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 MTCYBP12-201ENST00000440559 1134 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC023512.1-201ENST00000444513 499 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC012512.1-201ENST00000446594 718 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC245028.2-201ENST00000458673 253 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 snoU13.1-201ENST00000459157 104 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 RPL12P20-201ENST00000475538 479 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC111000.3-201ENST00000508057 576 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 PRELID3BP5-201ENST00000508612 460 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 VTA1P2-201ENST00000520205 911 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC138832.1-201ENST00000522871 556 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC018442.3-201ENST00000523025 183 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 NELL2-211ENST00000548826 559 ntTSL 2 BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC040958.1-201ENST00000561102 201 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC079148.1-201ENST00000565944 819 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 MIR5096-201ENST00000583713 70 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC084373.1-201ENST00000603311 235 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC011453.2-201ENST00000603737 729 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC098935.2-201ENST00000604222 466 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AL158211.2-201ENST00000607282 395 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AP001033.2-201ENST00000609701 1003 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC004241.3-201ENST00000611728 517 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC253576.2-201ENST00000618815 580 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC090617.9-201ENST00000623751 147 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 CR381572.2-201ENST00000624852 397 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 AC092376.2-201ENST00000622621 4116 ntBASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CCDC3Q9BQI4 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 VPS35P1-201ENST00000563400 1518 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 AC126755.2-208ENST00000327792 462 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 AC138969.1-213ENST00000331436 462 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 TAF9BP2-201ENST00000400856 499 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 PTGES3P2-201ENST00000407942 482 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 RN7SKP106-201ENST00000410832 272 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 AC114755.2-201ENST00000413520 361 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 TBCAP2-201ENST00000416175 326 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 AC006065.1-201ENST00000422539 802 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 RPL23AP4-201ENST00000427757 463 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 AL450023.3-201ENST00000440592 271 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms