Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC4.33□□□□□ -1.72
NKX3-1Q99801 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC4.33□□□□□ -1.72
NKX3-1Q99801 AL121612.2-201ENST00000612261 482 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.33□□□□□ -1.72
NKX3-1Q99801 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC4.33□□□□□ -1.72
NKX3-1Q99801 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.33□□□□□ -1.72
NKX3-1Q99801 AC107027.3-201ENST00000565095 3473 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
NKX3-1Q99801 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.33□□□□□ -1.72
NKX3-1Q99801 AC007382.1-201ENST00000624376 2618 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.33□□□□□ -1.72
NKX3-1Q99801 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
NKX3-1Q99801 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
NKX3-1Q99801 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
NKX3-1Q99801 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
NKX3-1Q99801 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.33□□□□□ -1.72
NKX3-1Q99801 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
NKX3-1Q99801 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
NKX3-1Q99801 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
NKX3-1Q99801 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 CCT8P1-201ENST00000413611 1657 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 CASC19-261ENST00000641853 1638 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
NKX3-1Q99801 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
NKX3-1Q99801 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 CASC19-221ENST00000641309 1382 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 AL645568.2-201ENST00000432815 1337 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 AC109780.1-201ENST00000451768 1344 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 SNORD56.4-201ENST00000363883 71 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 RNU1-43P-201ENST00000365052 165 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
NKX3-1Q99801 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
NKX3-1Q99801 SNORA70-201ENST00000384436 135 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 RNU6-1257P-201ENST00000384625 110 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 MIR142-201ENST00000384835 87 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 LRRC37BP1-201ENST00000398851 714 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 MRM2-202ENST00000407040 582 ntTSL 3 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 SPTLC1P2-201ENST00000407089 121 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 MIR1182-201ENST00000408363 97 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 RN7SKP222-201ENST00000410651 315 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 FO393419.3-201ENST00000428741 282 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 MTCO1P52-201ENST00000433928 531 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 CYCSP11-201ENST00000436426 315 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 AL450023.3-201ENST00000440592 271 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 Z92846.1-201ENST00000456203 268 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
NKX3-1Q99801 RPS4XP20-201ENST00000505751 772 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 PGAM1P13-201ENST00000507497 754 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 RNU6-1004P-201ENST00000516584 111 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 NPM1P35-201ENST00000533043 868 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 OR11J2P-201ENST00000555298 907 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 SS18L2P2-201ENST00000583960 235 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 AC016597.2-201ENST00000613256 341 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 AC008759.3-201ENST00000613300 508 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 AC007275.1-201ENST00000621243 671 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 AC135068.12-201ENST00000637370 931 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 AL445984.1-201ENST00000637834 659 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 AC107068.1-201ENST00000563286 4218 ntBASIC4.32□□□□□ -1.72
NKX3-1Q99801 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
NKX3-1Q99801 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.32□□□□□ -1.72
NKX3-1Q99801 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
NKX3-1Q99801 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
NKX3-1Q99801 ALB-219ENST00000621085 1418 ntTSL 5 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
NKX3-1Q99801 HSPA8P17-201ENST00000427029 1382 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 RPL23P2-201ENST00000320371 421 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
NKX3-1Q99801 RNU6-666P-201ENST00000363499 107 ntBASIC4.31□□□□□ -1.72
NKX3-1Q99801 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
NKX3-1Q99801 ADIG-201ENST00000373348 430 ntTSL 2 BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 193.5 ms