Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 SPTY2D1-AS1-206ENST00000636011 853 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 MIR3662-201ENST00000637030 95 ntBASIC5.3□□□□□ -1.56
CCDC140Q96MF4 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 CIR1-201ENST00000342016 1921 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 GABRA6-207ENST00000523217 2393 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 NXF2B-205ENST00000618881 3193 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC5.3□□□□□ -1.56
CCDC140Q96MF4 ZNF131-201ENST00000306938 2400 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 LINC01252-201ENST00000499291 3673 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 MROH3P-201ENST00000435735 2676 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 SCG5-201ENST00000300175 1238 ntAPPRIS P4 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 MYL1-201ENST00000341685 870 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 ENSA-207ENST00000362052 703 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 RNU5E-1-201ENST00000362477 120 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 Y_RNA.160-201ENST00000363677 92 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 RNU1-24P-201ENST00000364285 165 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 MIR541-201ENST00000401360 84 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 SNX10-203ENST00000409367 746 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AC084030.1-202ENST00000413385 880 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 MTND3P17-201ENST00000416968 344 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AL451164.1-201ENST00000417149 390 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AC013429.2-201ENST00000418798 781 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AL353777.1-201ENST00000425552 326 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 OR2B7P-201ENST00000429302 934 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 RPS7P4-201ENST00000444127 582 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 LAPTM4BP1-201ENST00000447781 690 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 RN7SL492P-201ENST00000460700 295 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 RN7SL382P-201ENST00000482631 282 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 RN7SL849P-201ENST00000485236 295 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 RN7SL868P-201ENST00000485915 303 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 ZNF525-204ENST00000491101 569 ntTSL 4 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 RPS4XP18-201ENST00000495480 763 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 RPL23AP80-201ENST00000495605 424 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AC010587.1-201ENST00000505809 469 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AP004607.5-201ENST00000532034 217 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 HAUS8P1-201ENST00000549005 542 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AC092375.1-201ENST00000550410 637 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AC012464.1-201ENST00000550687 540 ntTSL 4 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AL359212.1-201ENST00000556608 614 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AC053481.3-201ENST00000577881 843 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 MIR3118-1-201ENST00000581787 76 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 FGF7P1-201ENST00000582820 288 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 C10orf82-203ENST00000588184 852 ntAPPRIS ALT2 TSL 3 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AL391813.2-201ENST00000609113 322 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 BX664608.1-201ENST00000610519 487 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AC006453.3-201ENST00000635891 377 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AC022819.1-201ENST00000563495 3910 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 AC011933.2-201ENST00000578539 2790 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC140Q96MF4 ELL2P4-201ENST00000446870 1376 ntBASIC5.29□□□□□ -1.56
CCDC140Q96MF4 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 NUP58P1-201ENST00000502546 1738 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 AC110597.1-201ENST00000562669 3176 ntBASIC5.28□□□□□ -1.56
CCDC140Q96MF4 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC140Q96MF4 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms