Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RN7SL435P-201ENST00000584418 282 ntBASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 AC107982.3-201ENST00000584957 985 ntBASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 AC022106.2-201ENST00000620114 757 ntBASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 AL031595.2-201ENST00000624215 19071 ntBASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 RPL6P29-201ENST00000414863 865 ntBASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 KRR1P1-201ENST00000419430 803 ntBASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 ACTR3BP4-201ENST00000503033 1244 ntBASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 AC096577.2-201ENST00000611455 153 ntBASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 LINC01808-202ENST00000641680 1116 ntBASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 AC104260.2-201ENST00000623551 3497 ntBASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 UBBP2-201ENST00000376781 231 ntBASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 MIR3065-201ENST00000390137 79 ntBASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 AL935212.3-201ENST00000450729 284 ntBASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 RPS27AP17-201ENST00000463344 455 ntBASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 AL133372.1-201ENST00000493565 745 ntBASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 AC103968.1-201ENST00000557841 573 ntBASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC88AQ3V6T2 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC88AQ3V6T2 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC88AQ3V6T2 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC88AQ3V6T2 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC88AQ3V6T2 EIF3EP2-201ENST00000423042 1814 ntBASIC5.4□□□□□ -1.54
CCDC88AQ3V6T2 AC027228.2-201ENST00000567141 2154 ntBASIC5.4□□□□□ -1.54
CCDC88AQ3V6T2 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC88AQ3V6T2 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC88AQ3V6T2 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC88AQ3V6T2 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.55
CCDC88AQ3V6T2 GTF3AP5-201ENST00000442645 697 ntBASIC5.4□□□□□ -1.55
CCDC88AQ3V6T2 AC022336.1-201ENST00000475510 337 ntBASIC5.4□□□□□ -1.55
CCDC88AQ3V6T2 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.4□□□□□ -1.55
CCDC88AQ3V6T2 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC5.4□□□□□ -1.55
CCDC88AQ3V6T2 AC087477.6-201ENST00000559595 843 ntBASIC5.4□□□□□ -1.55
CCDC88AQ3V6T2 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC88AQ3V6T2 AC099669.2-201ENST00000616549 437 ntBASIC5.4□□□□□ -1.55
CCDC88AQ3V6T2 AC091953.5-201ENST00000622919 233 ntBASIC5.4□□□□□ -1.55
CCDC88AQ3V6T2 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.4□□□□□ -1.55
CCDC88AQ3V6T2 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.4□□□□□ -1.55
CCDC88AQ3V6T2 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC88AQ3V6T2 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC88AQ3V6T2 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.55
CCDC88AQ3V6T2 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC88AQ3V6T2 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC5.4□□□□□ -1.55
CCDC88AQ3V6T2 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC5.4□□□□□ -1.55
CCDC88AQ3V6T2 AC032011.1-201ENST00000611703 1549 ntBASIC5.4□□□□□ -1.55
CCDC88AQ3V6T2 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 ST7-221ENST00000465133 2155 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 AL355852.1-201ENST00000454081 1771 ntBASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 RNA5SP307-201ENST00000362863 116 ntBASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 COX6B1P7-201ENST00000430845 235 ntBASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 EIF2S2P5-201ENST00000457635 968 ntBASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 SNORA59A-201ENST00000459326 152 ntBASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 RNA5SP446-201ENST00000515955 82 ntBASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 RNA5SP49-201ENST00000516450 115 ntBASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms