Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL28A1Q2UY09 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 RN7SKP95-201ENST00000362860 303 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 RNU1-85P-201ENST00000364127 164 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 MIR122-201ENST00000385044 85 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 U3.28-201ENST00000391249 210 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 AP000357.1-201ENST00000409926 1165 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 CHEK2P3-201ENST00000416118 248 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 AC004690.1-201ENST00000418216 328 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 AC093422.3-201ENST00000428506 305 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 Z92846.1-201ENST00000456203 268 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 PSAT1P4-201ENST00000466500 526 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 TPT1P8-201ENST00000510120 555 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 BTF3P13-201ENST00000513224 490 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 DPRXP4-201ENST00000578053 568 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 AC124016.2-201ENST00000610058 665 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 AC011815.3-201ENST00000624194 473 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 AC126544.2-201ENST00000625174 749 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 AC132825.7-201ENST00000638744 335 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 AC006927.2-201ENST00000639256 389 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 HSPD1P14-201ENST00000432666 1618 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 AC073136.1-201ENST00000449426 2884 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 PCAT14-202ENST00000627127 3935 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 MTCO1P18-201ENST00000455518 1419 ntBASIC5.03□□□□□ -1.6
COL28A1Q2UY09 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.03□□□□□ -1.6
COL28A1Q2UY09 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AC008079.2-201ENST00000623543 20396 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AC092681.1-201ENST00000297369 291 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 FAM3C2-201ENST00000312214 681 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 RNA5SP332-201ENST00000391063 115 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 ATF1P1-201ENST00000406040 927 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 LSM5-205ENST00000409952 687 ntTSL 4 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 HMGB3P31-201ENST00000413333 595 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AC241520.1-201ENST00000422654 1099 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AC073310.1-201ENST00000423226 1033 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 DEFB130D-201ENST00000426866 237 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 FO393414.1-201ENST00000428697 1184 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 BMS1P19-201ENST00000433925 393 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 HMGB1P44-201ENST00000508597 572 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AP005403.1-201ENST00000579720 229 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AC011492.1-201ENST00000600023 315 ntBASIC5.02□□□□□ -1.61
COL28A1Q2UY09 AC009597.2-201ENST00000604659 592 ntBASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms