Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC6.18□□□□□ -1.42
MSH6P52701 AL161729.3-201ENST00000603533 673 ntBASIC6.18□□□□□ -1.42
MSH6P52701 AC015908.5-201ENST00000623289 343 ntBASIC6.18□□□□□ -1.42
MSH6P52701 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC6.18□□□□□ -1.42
MSH6P52701 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
MSH6P52701 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSH6P52701 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
MSH6P52701 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSH6P52701 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSH6P52701 RLIMP1-201ENST00000339626 1680 ntBASIC6.18□□□□□ -1.42
MSH6P52701 NAP1L4P1-201ENST00000319092 1157 ntBASIC6.18□□□□□ -1.42
MSH6P52701 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSH6P52701 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC6.18□□□□□ -1.42
MSH6P52701 PDSS1P1-201ENST00000422953 1114 ntBASIC6.18□□□□□ -1.42
MSH6P52701 OR8F1P-201ENST00000425243 930 ntBASIC6.18□□□□□ -1.42
MSH6P52701 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC6.18□□□□□ -1.42
MSH6P52701 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC6.18□□□□□ -1.42
MSH6P52701 TCEA1P3-201ENST00000443005 880 ntBASIC6.18□□□□□ -1.42
MSH6P52701 BTF3P6-201ENST00000448054 499 ntBASIC6.18□□□□□ -1.42
MSH6P52701 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC6.18□□□□□ -1.42
MSH6P52701 RNA5SP49-201ENST00000516450 115 ntBASIC6.18□□□□□ -1.42
MSH6P52701 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC6.18□□□□□ -1.42
MSH6P52701 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC6.18□□□□□ -1.42
MSH6P52701 OR7E10P-201ENST00000526420 991 ntBASIC6.18□□□□□ -1.42
MSH6P52701 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC6.18□□□□□ -1.42
MSH6P52701 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC6.18□□□□□ -1.42
MSH6P52701 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC6.18□□□□□ -1.42
MSH6P52701 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC6.18□□□□□ -1.42
MSH6P52701 AC010503.3-201ENST00000594355 540 ntBASIC6.18□□□□□ -1.42
MSH6P52701 AC090912.3-201ENST00000609775 533 ntBASIC6.18□□□□□ -1.42
MSH6P52701 AC015914.2-201ENST00000618167 288 ntBASIC6.18□□□□□ -1.42
MSH6P52701 MIR6891-201ENST00000618788 93 ntBASIC6.18□□□□□ -1.42
MSH6P52701 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC6.18□□□□□ -1.42
MSH6P52701 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
MSH6P52701 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
MSH6P52701 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSH6P52701 AC104623.2-202ENST00000623477 4002 ntBASIC6.17□□□□□ -1.42
MSH6P52701 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC6.17□□□□□ -1.42
MSH6P52701 AC032011.1-201ENST00000611703 1549 ntBASIC6.17□□□□□ -1.42
MSH6P52701 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
MSH6P52701 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
MSH6P52701 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC6.17□□□□□ -1.42
MSH6P52701 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSH6P52701 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSH6P52701 U3.35-201ENST00000408405 208 ntBASIC6.17□□□□□ -1.42
MSH6P52701 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC6.17□□□□□ -1.42
MSH6P52701 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC6.17□□□□□ -1.42
MSH6P52701 RGS17P1-201ENST00000423358 553 ntBASIC6.17□□□□□ -1.42
MSH6P52701 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC6.17□□□□□ -1.42
MSH6P52701 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC6.17□□□□□ -1.42
MSH6P52701 SNORA74D-201ENST00000516404 141 ntBASIC6.17□□□□□ -1.42
MSH6P52701 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC6.17□□□□□ -1.42
MSH6P52701 MIR4298-201ENST00000584380 73 ntBASIC6.17□□□□□ -1.42
MSH6P52701 AC079587.1-201ENST00000603846 277 ntBASIC6.17□□□□□ -1.42
MSH6P52701 AC112230.1-201ENST00000604342 547 ntBASIC6.17□□□□□ -1.42
MSH6P52701 IGKV2OR2-2-201ENST00000605025 300 ntBASIC6.17□□□□□ -1.42
MSH6P52701 TEX41-256ENST00000626411 368 ntTSL 5 BASIC6.17□□□□□ -1.42
MSH6P52701 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
MSH6P52701 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC6.16□□□□□ -1.42
MSH6P52701 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
MSH6P52701 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSH6P52701 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC6.16□□□□□ -1.42
MSH6P52701 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSH6P52701 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
MSH6P52701 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
MSH6P52701 MIR3065-201ENST00000390137 79 ntBASIC6.16□□□□□ -1.42
MSH6P52701 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC6.16□□□□□ -1.42
MSH6P52701 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC6.16□□□□□ -1.42
MSH6P52701 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC6.16□□□□□ -1.42
MSH6P52701 RPS3AP12-201ENST00000443616 753 ntBASIC6.16□□□□□ -1.42
MSH6P52701 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSH6P52701 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC6.16□□□□□ -1.42
MSH6P52701 AL500522.2-201ENST00000448562 343 ntBASIC6.16□□□□□ -1.42
MSH6P52701 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC6.16□□□□□ -1.42
MSH6P52701 MORF4L2P1-201ENST00000503761 858 ntBASIC6.16□□□□□ -1.42
MSH6P52701 RN7SKP157-201ENST00000516174 282 ntBASIC6.16□□□□□ -1.42
MSH6P52701 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC6.16□□□□□ -1.42
MSH6P52701 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC6.16□□□□□ -1.42
MSH6P52701 CCNG2P1-201ENST00000549521 1000 ntBASIC6.16□□□□□ -1.42
MSH6P52701 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC6.16□□□□□ -1.42
MSH6P52701 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC6.16□□□□□ -1.42
MSH6P52701 RN7SL435P-201ENST00000584418 282 ntBASIC6.16□□□□□ -1.42
MSH6P52701 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC6.16□□□□□ -1.42
MSH6P52701 AC007179.3-201ENST00000604976 235 ntBASIC6.16□□□□□ -1.42
MSH6P52701 SNORA51-201ENST00000606420 132 ntBASIC6.16□□□□□ -1.42
MSH6P52701 AC084757.4-201ENST00000616350 526 ntBASIC6.16□□□□□ -1.42
MSH6P52701 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC6.16□□□□□ -1.42
MSH6P52701 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSH6P52701 SLC2A3P1-201ENST00000519666 1451 ntBASIC6.16□□□□□ -1.42
MSH6P52701 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC6.16□□□□□ -1.42
MSH6P52701 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
MSH6P52701 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
MSH6P52701 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC6.15□□□□□ -1.42
MSH6P52701 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
MSH6P52701 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
MSH6P52701 ANAPC1P1-201ENST00000426186 2145 ntBASIC6.15□□□□□ -1.42
MSH6P52701 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
MSH6P52701 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.15□□□□□ -1.42
MSH6P52701 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
MSH6P52701 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC6.15□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 408.4 ms