Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
LHX3Q9UBR4 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.65□□□□□ -1.67
LHX3Q9UBR4 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
LHX3Q9UBR4 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.67
LHX3Q9UBR4 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
LHX3Q9UBR4 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.65□□□□□ -1.67
LHX3Q9UBR4 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 AC010266.2-201ENST00000564741 3255 ntBASIC4.64□□□□□ -1.67
LHX3Q9UBR4 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 AL355852.1-201ENST00000454081 1771 ntBASIC4.64□□□□□ -1.67
LHX3Q9UBR4 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 RN7SKP115-201ENST00000363177 317 ntBASIC4.64□□□□□ -1.67
LHX3Q9UBR4 AL034374.1-201ENST00000406329 351 ntBASIC4.64□□□□□ -1.67
LHX3Q9UBR4 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 UQCRBP1-201ENST00000421129 336 ntBASIC4.64□□□□□ -1.67
LHX3Q9UBR4 AC245028.1-201ENST00000423259 256 ntBASIC4.64□□□□□ -1.67
LHX3Q9UBR4 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 AP000936.3-201ENST00000438127 255 ntBASIC4.64□□□□□ -1.67
LHX3Q9UBR4 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 AL353898.1-201ENST00000444055 238 ntBASIC4.64□□□□□ -1.67
LHX3Q9UBR4 ARL2BPP10-201ENST00000446487 531 ntBASIC4.64□□□□□ -1.67
LHX3Q9UBR4 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 AC021205.1-201ENST00000468797 348 ntBASIC4.64□□□□□ -1.67
LHX3Q9UBR4 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 RNU6-889P-201ENST00000517189 103 ntBASIC4.64□□□□□ -1.67
LHX3Q9UBR4 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 AC209154.1-201ENST00000582156 337 ntBASIC4.64□□□□□ -1.67
LHX3Q9UBR4 AC008782.1-201ENST00000603386 430 ntBASIC4.64□□□□□ -1.67
LHX3Q9UBR4 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 AL049536.1-201ENST00000625043 744 ntBASIC4.64□□□□□ -1.67
LHX3Q9UBR4 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
LHX3Q9UBR4 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 OR9K1P-202ENST00000641111 3217 ntBASIC4.63□□□□□ -1.67
LHX3Q9UBR4 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AC006484.1-201ENST00000435086 1884 ntBASIC4.63□□□□□ -1.67
LHX3Q9UBR4 OR56B2P-201ENST00000317102 954 ntBASIC4.63□□□□□ -1.67
LHX3Q9UBR4 MIR129-1-201ENST00000384972 72 ntBASIC4.63□□□□□ -1.67
LHX3Q9UBR4 RPL26P37-201ENST00000411983 438 ntBASIC4.63□□□□□ -1.67
LHX3Q9UBR4 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 Z74021.1-201ENST00000423610 407 ntBASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 RPL23AP93-201ENST00000440847 484 ntBASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AC245517.2-201ENST00000442890 346 ntBASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AL035551.1-201ENST00000446931 348 ntBASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AC025181.1-201ENST00000477507 416 ntBASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AC090543.1-201ENST00000492168 485 ntBASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AC069061.3-201ENST00000582254 823 ntBASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AC006363.1-201ENST00000603806 463 ntBASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AC015802.5-201ENST00000607478 399 ntBASIC4.63□□□□□ -1.67
LHX3Q9UBR4 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 MIR6748-201ENST00000610433 71 ntBASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AC107308.1-201ENST00000615897 301 ntBASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.63□□□□□ -1.67
LHX3Q9UBR4 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms