Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC4.37□□□□□ -1.71
SSX3Q99909 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SSX3Q99909 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
SSX3Q99909 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SSX3Q99909 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
SSX3Q99909 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.37□□□□□ -1.71
SSX3Q99909 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
SSX3Q99909 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SSX3Q99909 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC4.36□□□□□ -1.71
SSX3Q99909 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SSX3Q99909 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
SSX3Q99909 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.36□□□□□ -1.71
SSX3Q99909 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SSX3Q99909 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.36□□□□□ -1.71
SSX3Q99909 USP9YP4-201ENST00000424401 1745 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
SSX3Q99909 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC4.36□□□□□ -1.71
SSX3Q99909 RNU6-252P-201ENST00000363232 107 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SSX3Q99909 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SSX3Q99909 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
SSX3Q99909 CDC123-202ENST00000378900 933 ntTSL 5 BASIC4.36□□□□□ -1.71
SSX3Q99909 SNORA67-201ENST00000384423 137 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 MIR105-2-201ENST00000385083 81 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
SSX3Q99909 MIR708-201ENST00000390708 88 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 HSPA8P15-201ENST00000401676 786 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 HMGB1P13-201ENST00000406019 642 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 PTGES3P2-201ENST00000407942 482 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 ATG4AP1-201ENST00000416893 538 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 AC104333.2-201ENST00000422630 192 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC4.36□□□□□ -1.71
SSX3Q99909 EIF2S2P3-201ENST00000428356 999 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC4.36□□□□□ -1.71
SSX3Q99909 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC4.36□□□□□ -1.71
SSX3Q99909 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC4.36□□□□□ -1.71
SSX3Q99909 YWHAZP2-201ENST00000440317 728 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.36□□□□□ -1.71
SSX3Q99909 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC4.36□□□□□ -1.71
SSX3Q99909 AC090804.1-201ENST00000448870 490 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 AURKAPS1-201ENST00000451805 1212 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 FGF7P3-201ENST00000454645 303 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 RPL5P30-201ENST00000465511 891 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 RN7SL799P-201ENST00000475891 298 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC4.36□□□□□ -1.71
SSX3Q99909 AC006499.3-201ENST00000506077 748 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.36□□□□□ -1.71
SSX3Q99909 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SSX3Q99909 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.36□□□□□ -1.71
SSX3Q99909 CIR1P1-201ENST00000524055 1133 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 AC027369.5-201ENST00000533838 755 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 ASB8-215ENST00000540782 659 ntTSL 3 BASIC4.36□□□□□ -1.71
SSX3Q99909 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
SSX3Q99909 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SSX3Q99909 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SSX3Q99909 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
SSX3Q99909 CLMN-206ENST00000556441 452 ntTSL 5 BASIC4.36□□□□□ -1.71
SSX3Q99909 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC4.36□□□□□ -1.71
SSX3Q99909 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC4.36□□□□□ -1.71
SSX3Q99909 MTND4LP25-201ENST00000570218 163 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 MTND4LP24-201ENST00000572277 291 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC4.36□□□□□ -1.71
SSX3Q99909 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.36□□□□□ -1.71
SSX3Q99909 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC4.36□□□□□ -1.71
SSX3Q99909 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC4.36□□□□□ -1.71
SSX3Q99909 AC211433.2-201ENST00000608433 387 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC4.36□□□□□ -1.71
SSX3Q99909 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC4.36□□□□□ -1.71
SSX3Q99909 WWOX-217ENST00000620008 450 ntTSL 2 BASIC4.36□□□□□ -1.71
SSX3Q99909 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.36□□□□□ -1.71
SSX3Q99909 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC4.36□□□□□ -1.71
SSX3Q99909 CCT5-215ENST00000625723 135 ntTSL 5 BASIC4.36□□□□□ -1.71
SSX3Q99909 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.36□□□□□ -1.71
SSX3Q99909 WDR75-207ENST00000631047 270 ntTSL 5 BASIC4.36□□□□□ -1.71
SSX3Q99909 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC4.36□□□□□ -1.71
SSX3Q99909 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
SSX3Q99909 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
SSX3Q99909 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.36□□□□□ -1.71
SSX3Q99909 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SSX3Q99909 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.36□□□□□ -1.71
SSX3Q99909 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.36□□□□□ -1.71
SSX3Q99909 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SSX3Q99909 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SSX3Q99909 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.36□□□□□ -1.71
SSX3Q99909 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
SSX3Q99909 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.36□□□□□ -1.71
SSX3Q99909 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SSX3Q99909 AC100778.3-201ENST00000580060 1750 ntBASIC4.35□□□□□ -1.71
SSX3Q99909 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SSX3Q99909 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.35□□□□□ -1.71
SSX3Q99909 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
SSX3Q99909 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SSX3Q99909 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.35□□□□□ -1.71
SSX3Q99909 RNA5SP183-201ENST00000362452 119 ntBASIC4.35□□□□□ -1.71
SSX3Q99909 RNU1-19P-201ENST00000363306 165 ntBASIC4.35□□□□□ -1.71
SSX3Q99909 SNORD56.6-201ENST00000384569 71 ntBASIC4.35□□□□□ -1.71
SSX3Q99909 RNU1-149P-201ENST00000390870 161 ntBASIC4.35□□□□□ -1.71
SSX3Q99909 RNA5SP339-201ENST00000390987 122 ntBASIC4.35□□□□□ -1.71
SSX3Q99909 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SSX3Q99909 AL590290.1-201ENST00000405336 380 ntBASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 528.9 ms