Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC092427.1-201ENST00000439177 601 ntBASIC5.97□□□□□ -1.45
RNF4P78317 AL450263.2-201ENST00000439400 589 ntBASIC5.97□□□□□ -1.45
RNF4P78317 AC004865.1-201ENST00000442276 1003 ntBASIC5.97□□□□□ -1.45
RNF4P78317 RPL26P28-201ENST00000451325 435 ntBASIC5.97□□□□□ -1.45
RNF4P78317 VDAC2P4-201ENST00000452925 711 ntBASIC5.97□□□□□ -1.45
RNF4P78317 AL133351.3-201ENST00000454998 193 ntBASIC5.97□□□□□ -1.45
RNF4P78317 AC091564.1-201ENST00000464563 479 ntBASIC5.97□□□□□ -1.45
RNF4P78317 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.97□□□□□ -1.45
RNF4P78317 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC5.97□□□□□ -1.45
RNF4P78317 RN7SL568P-201ENST00000493069 298 ntBASIC5.97□□□□□ -1.45
RNF4P78317 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC5.97□□□□□ -1.45
RNF4P78317 DUBR-205ENST00000495228 411 ntTSL 2 BASIC5.97□□□□□ -1.45
RNF4P78317 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC5.97□□□□□ -1.45
RNF4P78317 AC093816.1-201ENST00000515076 913 ntBASIC5.97□□□□□ -1.45
RNF4P78317 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC5.97□□□□□ -1.45
RNF4P78317 SNORA18.6-201ENST00000516792 115 ntBASIC5.97□□□□□ -1.45
RNF4P78317 DEFB131D-201ENST00000526803 184 ntBASIC5.97□□□□□ -1.45
RNF4P78317 AP001284.1-201ENST00000528393 2118 ntBASIC5.97□□□□□ -1.45
RNF4P78317 NMNAT1P1-201ENST00000554095 876 ntBASIC5.97□□□□□ -1.45
RNF4P78317 TPRX1P1-201ENST00000557620 319 ntBASIC5.97□□□□□ -1.45
RNF4P78317 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
RNF4P78317 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC5.97□□□□□ -1.45
RNF4P78317 AC093519.1-201ENST00000566109 298 ntBASIC5.97□□□□□ -1.45
RNF4P78317 AC012146.2-201ENST00000576545 416 ntBASIC5.97□□□□□ -1.45
RNF4P78317 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.97□□□□□ -1.45
RNF4P78317 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC5.97□□□□□ -1.45
RNF4P78317 AC063977.5-201ENST00000601044 974 ntBASIC5.97□□□□□ -1.45
RNF4P78317 AC090578.1-201ENST00000604955 591 ntBASIC5.97□□□□□ -1.45
RNF4P78317 IGKV2OR2-1-201ENST00000605129 304 ntBASIC5.97□□□□□ -1.45
RNF4P78317 TEX41-293ENST00000630451 690 ntTSL 5 BASIC5.97□□□□□ -1.45
RNF4P78317 AL132640.3-201ENST00000630473 177 ntBASIC5.97□□□□□ -1.45
RNF4P78317 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
RNF4P78317 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
RNF4P78317 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.97□□□□□ -1.45
RNF4P78317 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.97□□□□□ -1.45
RNF4P78317 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC5.97□□□□□ -1.45
RNF4P78317 SLC9B1P1-201ENST00000331172 1337 ntBASIC5.97□□□□□ -1.45
RNF4P78317 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
RNF4P78317 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC5.97□□□□□ -1.45
RNF4P78317 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.97□□□□□ -1.45
RNF4P78317 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.45
RNF4P78317 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.45
RNF4P78317 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.45
RNF4P78317 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
RNF4P78317 AP002370.1-201ENST00000528055 1602 ntBASIC5.96□□□□□ -1.45
RNF4P78317 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.45
RNF4P78317 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
RNF4P78317 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.45
RNF4P78317 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.96□□□□□ -1.46
RNF4P78317 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
RNF4P78317 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
RNF4P78317 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.96□□□□□ -1.46
RNF4P78317 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
RNF4P78317 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
RNF4P78317 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
RNF4P78317 RNU6-462P-201ENST00000362659 105 ntBASIC5.96□□□□□ -1.46
RNF4P78317 RNU6-216P-201ENST00000363282 104 ntBASIC5.96□□□□□ -1.46
RNF4P78317 Y_RNA.296-201ENST00000364930 108 ntBASIC5.96□□□□□ -1.46
RNF4P78317 RNU6-876P-201ENST00000391295 104 ntBASIC5.96□□□□□ -1.46
RNF4P78317 FGF7P8-201ENST00000402994 292 ntBASIC5.96□□□□□ -1.46
RNF4P78317 Y_RNA.598-201ENST00000410480 95 ntBASIC5.96□□□□□ -1.46
RNF4P78317 RPL21P50-201ENST00000417698 477 ntBASIC5.96□□□□□ -1.46
RNF4P78317 TMBIM7P-201ENST00000418074 855 ntBASIC5.96□□□□□ -1.46
RNF4P78317 B3GALNT1P1-201ENST00000420569 975 ntBASIC5.96□□□□□ -1.46
RNF4P78317 REREP1Y-201ENST00000422655 198 ntBASIC5.96□□□□□ -1.46
RNF4P78317 AL157884.1-201ENST00000424561 454 ntBASIC5.96□□□□□ -1.46
RNF4P78317 ELOCP14-201ENST00000428070 331 ntBASIC5.96□□□□□ -1.46
RNF4P78317 RPL23AP19-201ENST00000436229 369 ntBASIC5.96□□□□□ -1.46
RNF4P78317 REREP2Y-201ENST00000439103 200 ntBASIC5.96□□□□□ -1.46
RNF4P78317 ELOCP7-201ENST00000439968 331 ntBASIC5.96□□□□□ -1.46
RNF4P78317 MTCO3P18-201ENST00000440206 761 ntBASIC5.96□□□□□ -1.46
RNF4P78317 AC097359.1-201ENST00000447946 463 ntBASIC5.96□□□□□ -1.46
RNF4P78317 DPPA3P1-201ENST00000448050 469 ntBASIC5.96□□□□□ -1.46
RNF4P78317 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
RNF4P78317 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC5.96□□□□□ -1.46
RNF4P78317 NDUFA5P7-201ENST00000452914 242 ntBASIC5.96□□□□□ -1.46
RNF4P78317 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC5.96□□□□□ -1.46
RNF4P78317 AMD1P1-201ENST00000457220 922 ntBASIC5.96□□□□□ -1.46
RNF4P78317 snoU109.1-201ENST00000459339 135 ntBASIC5.96□□□□□ -1.46
RNF4P78317 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC5.96□□□□□ -1.46
RNF4P78317 AL355032.1-201ENST00000472981 438 ntBASIC5.96□□□□□ -1.46
RNF4P78317 AC092824.1-201ENST00000483524 576 ntBASIC5.96□□□□□ -1.46
RNF4P78317 GM2AP2-201ENST00000491764 562 ntBASIC5.96□□□□□ -1.46
RNF4P78317 AL117692.1-201ENST00000494283 713 ntBASIC5.96□□□□□ -1.46
RNF4P78317 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC5.96□□□□□ -1.46
RNF4P78317 AC090638.1-201ENST00000498296 909 ntBASIC5.96□□□□□ -1.46
RNF4P78317 AC008628.2-201ENST00000502605 298 ntBASIC5.96□□□□□ -1.46
RNF4P78317 AC114981.1-201ENST00000503897 678 ntBASIC5.96□□□□□ -1.46
RNF4P78317 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC5.96□□□□□ -1.46
RNF4P78317 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC5.96□□□□□ -1.46
RNF4P78317 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC5.96□□□□□ -1.46
RNF4P78317 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.96□□□□□ -1.46
RNF4P78317 RNU6-583P-201ENST00000516012 92 ntBASIC5.96□□□□□ -1.46
RNF4P78317 CYCSP25-201ENST00000525280 316 ntBASIC5.96□□□□□ -1.46
RNF4P78317 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC5.96□□□□□ -1.46
RNF4P78317 AC104383.1-201ENST00000530297 370 ntBASIC5.96□□□□□ -1.46
RNF4P78317 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC5.96□□□□□ -1.46
RNF4P78317 AC008055.1-201ENST00000547032 609 ntBASIC5.96□□□□□ -1.46
RNF4P78317 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC5.96□□□□□ -1.46
RNF4P78317 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC5.96□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms