Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC4.88□□□□□ -1.63
HNF4AP41235 HAUS8P1-201ENST00000549005 542 ntBASIC4.88□□□□□ -1.63
HNF4AP41235 AC106785.3-201ENST00000564064 847 ntBASIC4.88□□□□□ -1.63
HNF4AP41235 AC116553.2-201ENST00000564203 463 ntBASIC4.88□□□□□ -1.63
HNF4AP41235 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC4.88□□□□□ -1.63
HNF4AP41235 AC115085.1-201ENST00000588924 229 ntBASIC4.88□□□□□ -1.63
HNF4AP41235 AC073137.1-201ENST00000605636 634 ntBASIC4.88□□□□□ -1.63
HNF4AP41235 SDR42E1P1-201ENST00000611327 477 ntBASIC4.88□□□□□ -1.63
HNF4AP41235 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.88□□□□□ -1.63
HNF4AP41235 AC010435.1-201ENST00000623353 1177 ntBASIC4.88□□□□□ -1.63
HNF4AP41235 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.88□□□□□ -1.63
HNF4AP41235 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC4.88□□□□□ -1.63
HNF4AP41235 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC4.88□□□□□ -1.63
HNF4AP41235 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HNF4AP41235 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HNF4AP41235 MTND4P31-201ENST00000425607 1343 ntBASIC4.88□□□□□ -1.63
HNF4AP41235 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.88□□□□□ -1.63
HNF4AP41235 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.88□□□□□ -1.63
HNF4AP41235 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
HNF4AP41235 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
HNF4AP41235 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.88□□□□□ -1.63
HNF4AP41235 AL353743.4-201ENST00000422653 1547 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.87□□□□□ -1.63
HNF4AP41235 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HNF4AP41235 AC092162.3-201ENST00000624511 1624 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
HNF4AP41235 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HNF4AP41235 USP9YP4-201ENST00000424401 1745 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HNF4AP41235 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.87□□□□□ -1.63
HNF4AP41235 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
HNF4AP41235 U3.36-201ENST00000408418 213 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 AC010385.1-201ENST00000412374 256 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 MTND4P24-201ENST00000424002 397 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.87□□□□□ -1.63
HNF4AP41235 AC005033.1-201ENST00000428904 813 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 SDR42E1P3-201ENST00000438345 502 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 MTCO3P43-201ENST00000440974 771 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 TXNP5-201ENST00000441043 315 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 AL163193.1-201ENST00000444895 788 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.87□□□□□ -1.63
HNF4AP41235 AC093166.2-201ENST00000455969 1017 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 AC097484.1-201ENST00000471148 389 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 RN7SL799P-201ENST00000475891 298 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 AC011037.1-201ENST00000483964 558 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 AC023050.1-201ENST00000498198 304 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC4.87□□□□□ -1.63
HNF4AP41235 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC4.87□□□□□ -1.63
HNF4AP41235 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.87□□□□□ -1.63
HNF4AP41235 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
HNF4AP41235 RPL23AP53-201ENST00000521854 457 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 AC013701.1-201ENST00000522657 465 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC4.87□□□□□ -1.63
HNF4AP41235 HAUS1P3-201ENST00000523909 662 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
HNF4AP41235 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HNF4AP41235 OR1F2P-201ENST00000570470 933 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC4.87□□□□□ -1.63
HNF4AP41235 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.87□□□□□ -1.63
HNF4AP41235 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC4.87□□□□□ -1.63
HNF4AP41235 AC011477.5-201ENST00000586571 259 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC4.87□□□□□ -1.63
HNF4AP41235 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC4.87□□□□□ -1.63
HNF4AP41235 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.87□□□□□ -1.63
HNF4AP41235 U6.48-201ENST00000618523 106 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.87□□□□□ -1.63
HNF4AP41235 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
HNF4AP41235 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.87□□□□□ -1.63
HNF4AP41235 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HNF4AP41235 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.87□□□□□ -1.63
HNF4AP41235 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.87□□□□□ -1.63
HNF4AP41235 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HNF4AP41235 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
HNF4AP41235 AP000542.2-201ENST00000623199 6179 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
HNF4AP41235 AC083843.3-201ENST00000623679 2186 ntBASIC4.87□□□□□ -1.63
HNF4AP41235 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.87□□□□□ -1.63
HNF4AP41235 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.86□□□□□ -1.63
HNF4AP41235 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
HNF4AP41235 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.86□□□□□ -1.63
HNF4AP41235 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HNF4AP41235 CR788268.1-201ENST00000603931 1809 ntBASIC4.86□□□□□ -1.63
HNF4AP41235 HSPA8P18-201ENST00000439846 1928 ntBASIC4.86□□□□□ -1.63
HNF4AP41235 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
HNF4AP41235 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HNF4AP41235 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HNF4AP41235 RNA5SP455-201ENST00000365190 119 ntBASIC4.86□□□□□ -1.63
HNF4AP41235 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HNF4AP41235 OR1F12-201ENST00000402365 945 ntBASIC4.86□□□□□ -1.63
HNF4AP41235 DNAJA1P4-201ENST00000406473 1166 ntBASIC4.86□□□□□ -1.63
HNF4AP41235 SNORA77-201ENST00000408716 125 ntBASIC4.86□□□□□ -1.63
HNF4AP41235 AC012519.1-201ENST00000424588 610 ntBASIC4.86□□□□□ -1.63
HNF4AP41235 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC4.86□□□□□ -1.63
HNF4AP41235 BX323845.1-201ENST00000432417 179 ntBASIC4.86□□□□□ -1.63
HNF4AP41235 AL035458.1-201ENST00000433096 585 ntBASIC4.86□□□□□ -1.63
HNF4AP41235 RPS29P9-201ENST00000440360 171 ntBASIC4.86□□□□□ -1.63
HNF4AP41235 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.86□□□□□ -1.63
HNF4AP41235 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC4.86□□□□□ -1.63
HNF4AP41235 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC4.86□□□□□ -1.63
HNF4AP41235 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms