Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RNU1-106P-201ENST00000384382 164 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
SMARCA1P28370 AL078599.1-201ENST00000402075 293 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 RN7SKP114-201ENST00000410327 279 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 RN7SKP278-201ENST00000410504 342 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 AC092638.1-201ENST00000411966 1275 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 KRR1P1-201ENST00000419430 803 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
SMARCA1P28370 LYPLA1P1-201ENST00000434514 622 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
SMARCA1P28370 MTCYBP31-201ENST00000438855 1122 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.95□□□□□ -1.46
SMARCA1P28370 TRY2P-201ENST00000448860 689 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 OFD1P7Y-201ENST00000454643 1155 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 RPS18P6-201ENST00000476880 458 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC5.95□□□□□ -1.46
SMARCA1P28370 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
SMARCA1P28370 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
SMARCA1P28370 RN7SL441P-201ENST00000492388 296 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC5.95□□□□□ -1.46
SMARCA1P28370 ATG10-208ENST00000513634 618 ntTSL 2 BASIC5.95□□□□□ -1.46
SMARCA1P28370 RNU6-1028P-201ENST00000517164 93 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 MTATP6P15-201ENST00000527233 835 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC5.95□□□□□ -1.46
SMARCA1P28370 AC092490.3-201ENST00000545370 572 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
SMARCA1P28370 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
SMARCA1P28370 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC5.95□□□□□ -1.46
SMARCA1P28370 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC5.95□□□□□ -1.46
SMARCA1P28370 AC009852.2-201ENST00000567898 485 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.95□□□□□ -1.46
SMARCA1P28370 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC5.95□□□□□ -1.46
SMARCA1P28370 AC002487.1-201ENST00000604565 994 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 AP002799.1-201ENST00000623552 423 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 AC145207.9-201ENST00000623802 325 ntBASIC5.95□□□□□ -1.46
SMARCA1P28370 CCT5-215ENST00000625723 135 ntTSL 5 BASIC5.95□□□□□ -1.46
SMARCA1P28370 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.95□□□□□ -1.46
SMARCA1P28370 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
SMARCA1P28370 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
SMARCA1P28370 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SMARCA1P28370 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
SMARCA1P28370 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
SMARCA1P28370 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SMARCA1P28370 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
SMARCA1P28370 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SMARCA1P28370 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
SMARCA1P28370 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SMARCA1P28370 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SMARCA1P28370 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
SMARCA1P28370 RNA5SP507-201ENST00000363603 121 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 RNA5SP223-201ENST00000365174 120 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 SNORA5.1-201ENST00000384275 131 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 MIR513B-201ENST00000385136 84 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 RNU6-932P-201ENST00000391108 106 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 MTND4P13-201ENST00000402078 1023 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 OR2X1P-201ENST00000421144 687 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC5.94□□□□□ -1.46
SMARCA1P28370 HMGN2P27-201ENST00000427352 270 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 AC022022.1-201ENST00000430304 178 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 CYCSP11-201ENST00000436426 315 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 CR769776.1-201ENST00000441254 787 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 AC073850.1-201ENST00000449243 255 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 CCNB1IP1P3-201ENST00000454702 829 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 AL133244.1-201ENST00000456007 258 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 GTF2IP12-201ENST00000456547 356 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 RPL6P9-201ENST00000466502 859 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.94□□□□□ -1.46
SMARCA1P28370 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.94□□□□□ -1.46
SMARCA1P28370 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC5.94□□□□□ -1.46
SMARCA1P28370 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC5.94□□□□□ -1.46
SMARCA1P28370 RN7SKP260-201ENST00000516907 149 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 AC018442.3-201ENST00000523025 183 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC5.94□□□□□ -1.46
SMARCA1P28370 AC051619.2-201ENST00000559063 397 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.94□□□□□ -1.46
SMARCA1P28370 AC009097.3-201ENST00000563557 1018 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC5.94□□□□□ -1.46
SMARCA1P28370 AC006272.2-201ENST00000594725 163 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC5.94□□□□□ -1.46
SMARCA1P28370 AC008751.2-201ENST00000597885 980 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 AC024060.1-201ENST00000607052 494 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 AC091932.2-201ENST00000623014 291 ntBASIC5.94□□□□□ -1.46
SMARCA1P28370 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.94□□□□□ -1.46
SMARCA1P28370 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SMARCA1P28370 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SMARCA1P28370 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SMARCA1P28370 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SMARCA1P28370 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC5.94□□□□□ -1.46
SMARCA1P28370 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SMARCA1P28370 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.94□□□□□ -1.46
SMARCA1P28370 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
SMARCA1P28370 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
SMARCA1P28370 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.94□□□□□ -1.46
SMARCA1P28370 MTND4P8-201ENST00000514997 1362 ntBASIC5.93□□□□□ -1.46
SMARCA1P28370 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.93□□□□□ -1.46
SMARCA1P28370 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SMARCA1P28370 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
SMARCA1P28370 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms