Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL4A1P02462 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
COL4A1P02462 AP001002.1-201ENST00000625148 1513 ntBASIC5.17□□□□□ -1.58
COL4A1P02462 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
COL4A1P02462 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL4A1P02462 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL4A1P02462 SNORD66.1-201ENST00000391230 76 ntBASIC5.17□□□□□ -1.58
COL4A1P02462 ENSAP1-201ENST00000392855 326 ntBASIC5.17□□□□□ -1.58
COL4A1P02462 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC5.17□□□□□ -1.58
COL4A1P02462 PPIAP13-201ENST00000434706 478 ntBASIC5.17□□□□□ -1.58
COL4A1P02462 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC5.17□□□□□ -1.58
COL4A1P02462 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC5.17□□□□□ -1.58
COL4A1P02462 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC5.17□□□□□ -1.58
COL4A1P02462 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL4A1P02462 AC114878.2-201ENST00000604863 1251 ntBASIC5.17□□□□□ -1.58
COL4A1P02462 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC5.17□□□□□ -1.58
COL4A1P02462 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC5.17□□□□□ -1.58
COL4A1P02462 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL4A1P02462 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL4A1P02462 HSPD1P14-201ENST00000432666 1618 ntBASIC5.17□□□□□ -1.58
COL4A1P02462 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL4A1P02462 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.17□□□□□ -1.58
COL4A1P02462 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL4A1P02462 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL4A1P02462 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL4A1P02462 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL4A1P02462 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC5.16□□□□□ -1.58
COL4A1P02462 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL4A1P02462 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.16□□□□□ -1.58
COL4A1P02462 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL4A1P02462 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL4A1P02462 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
COL4A1P02462 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
COL4A1P02462 ATP5F1P3-201ENST00000397213 657 ntBASIC5.16□□□□□ -1.58
COL4A1P02462 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.16□□□□□ -1.58
COL4A1P02462 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC5.16□□□□□ -1.58
COL4A1P02462 RPL23AP81-201ENST00000455252 467 ntBASIC5.16□□□□□ -1.58
COL4A1P02462 AC006064.5-201ENST00000541782 248 ntBASIC5.16□□□□□ -1.58
COL4A1P02462 AL352979.3-201ENST00000553515 247 ntBASIC5.16□□□□□ -1.58
COL4A1P02462 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC5.16□□□□□ -1.58
COL4A1P02462 AC090312.1-201ENST00000580637 348 ntBASIC5.16□□□□□ -1.58
COL4A1P02462 AL121772.2-201ENST00000614331 297 ntBASIC5.16□□□□□ -1.58
COL4A1P02462 AC010608.2-201ENST00000624830 470 ntBASIC5.16□□□□□ -1.58
COL4A1P02462 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
COL4A1P02462 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
COL4A1P02462 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
COL4A1P02462 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
COL4A1P02462 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.16□□□□□ -1.58
COL4A1P02462 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
COL4A1P02462 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.15□□□□□ -1.58
COL4A1P02462 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.58
COL4A1P02462 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL4A1P02462 AC027228.2-201ENST00000567141 2154 ntBASIC5.15□□□□□ -1.58
COL4A1P02462 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL4A1P02462 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.58
COL4A1P02462 U8.11-201ENST00000384699 133 ntBASIC5.15□□□□□ -1.58
COL4A1P02462 U8.12-201ENST00000384701 133 ntBASIC5.15□□□□□ -1.58
COL4A1P02462 MIR554-201ENST00000384874 96 ntBASIC5.15□□□□□ -1.58
COL4A1P02462 AC093578.1-201ENST00000415219 368 ntBASIC5.15□□□□□ -1.58
COL4A1P02462 AC006011.1-201ENST00000442758 349 ntBASIC5.15□□□□□ -1.58
COL4A1P02462 RPS27AP15-201ENST00000447672 466 ntBASIC5.15□□□□□ -1.58
COL4A1P02462 U8.18-201ENST00000459285 133 ntBASIC5.15□□□□□ -1.58
COL4A1P02462 AC091959.2-201ENST00000477363 321 ntBASIC5.15□□□□□ -1.58
COL4A1P02462 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC5.15□□□□□ -1.58
COL4A1P02462 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC5.15□□□□□ -1.58
COL4A1P02462 NDUFB4P12-201ENST00000513465 390 ntBASIC5.15□□□□□ -1.58
COL4A1P02462 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC5.15□□□□□ -1.58
COL4A1P02462 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC5.15□□□□□ -1.58
COL4A1P02462 MIR6500-201ENST00000622700 86 ntBASIC5.15□□□□□ -1.58
COL4A1P02462 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC5.15□□□□□ -1.58
COL4A1P02462 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
COL4A1P02462 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.58
COL4A1P02462 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.15□□□□□ -1.58
COL4A1P02462 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL4A1P02462 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.58
COL4A1P02462 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL4A1P02462 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL4A1P02462 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL4A1P02462 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.15□□□□□ -1.59
COL4A1P02462 AL513548.1-201ENST00000562904 1724 ntBASIC5.15□□□□□ -1.59
COL4A1P02462 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL4A1P02462 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.59
COL4A1P02462 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
COL4A1P02462 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL4A1P02462 RNU1-44P-201ENST00000384453 163 ntBASIC5.15□□□□□ -1.59
COL4A1P02462 AP000357.1-201ENST00000409926 1165 ntBASIC5.15□□□□□ -1.59
COL4A1P02462 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.15□□□□□ -1.59
COL4A1P02462 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC5.15□□□□□ -1.59
COL4A1P02462 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC5.15□□□□□ -1.59
COL4A1P02462 RPS4XP4-201ENST00000443195 763 ntBASIC5.15□□□□□ -1.59
COL4A1P02462 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL4A1P02462 ABCF2P2-201ENST00000450549 296 ntBASIC5.15□□□□□ -1.59
COL4A1P02462 AC027176.2-201ENST00000559166 746 ntBASIC5.15□□□□□ -1.59
COL4A1P02462 AC015871.5-202ENST00000623252 701 ntBASIC5.15□□□□□ -1.59
COL4A1P02462 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC5.14□□□□□ -1.59
COL4A1P02462 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL4A1P02462 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL4A1P02462 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL4A1P02462 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.14□□□□□ -1.59
COL4A1P02462 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 148.6 ms