Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 PTBP2-203ENST00000426398 3027 ntAPPRIS P3 TSL 1 (best) BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 HMG20A-202ENST00000381714 4112 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 Y_RNA.132-201ENST00000363421 102 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 RNU6-744P-201ENST00000365557 107 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 RNU6-1316P-201ENST00000384242 108 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 MIR575-201ENST00000385013 94 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 DHFRP6-201ENST00000401776 268 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 RNU2-9P-201ENST00000410194 145 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 AL133384.1-201ENST00000412744 351 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 MTCO2P27-201ENST00000420740 428 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 SPATA20P1-201ENST00000423089 438 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 AC114752.2-201ENST00000424119 404 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 IGKV1OR9-1-201ENST00000424370 284 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 GTF2IP13-201ENST00000438487 386 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 BX679664.2-201ENST00000439282 283 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 SPRYD7P1-201ENST00000443861 570 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 LINC01771-201ENST00000445039 567 ntTSL 4 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 AC016724.1-201ENST00000453215 421 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 AP1S2P1-201ENST00000457344 379 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 RN7SL170P-201ENST00000487098 295 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 AC108693.1-201ENST00000496068 432 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 B3GNTL1P1-201ENST00000509174 289 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 RNU6-1314P-201ENST00000517139 104 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 AC013546.1-201ENST00000523232 564 ntTSL 4 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 AC123904.2-201ENST00000548059 300 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 EEF1B2P1-201ENST00000567221 672 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 Z84480.1-201ENST00000605131 311 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 AC009318.4-201ENST00000620496 486 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 SLC35A3-201ENST00000370153 5708 ntTSL 5 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 GOLGA6L6-201ENST00000619213 4013 ntAPPRIS P1 TSL 5 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 ZNF658-206ENST00000621410 4025 ntAPPRIS P1 TSL 2 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 EEF1A1P26-201ENST00000458319 1363 ntBASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 LGI1-211ENST00000630047 1751 ntTSL 2 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 CDH17-203ENST00000450165 2625 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 SLC14A2-203ENST00000586448 3540 ntAPPRIS P1 TSL 2 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 IL18RAP-202ENST00000409369 1890 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 OR10W1-201ENST00000395079 1469 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
LIMD1Q9UGP4 ALB-214ENST00000509063 1911 ntTSL 5 BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 SLC6A14-202ENST00000598581 4520 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 MKKS-201ENST00000347364 6714 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 PIK3R3-202ENST00000372006 5019 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 BDNF-209ENST00000420794 4176 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 CTNNA1-201ENST00000302763 3756 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 GDPD4-202ENST00000376217 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 PCDH15-226ENST00000613657 6329 ntAPPRIS ALT2 TSL 5 BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 ESRG-201ENST00000583516 3140 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 NPIPB4-203ENST00000415645 3606 ntAPPRIS P1 TSL 5 BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 AL049647.1-201ENST00000319682 1789 ntTSL 2 BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 Y_RNA.255-201ENST00000364581 97 ntBASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 SNORA7A-201ENST00000384765 139 ntBASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 AC087752.1-201ENST00000391360 558 ntBASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 AC026310.1-201ENST00000396004 378 ntBASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 DUTP4-201ENST00000424782 475 ntBASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 AL356276.2-201ENST00000435919 558 ntBASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 AC245291.3-201ENST00000443400 292 ntBASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 DDX3P2-201ENST00000446138 111 ntBASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 TCEA1P1-201ENST00000449716 880 ntBASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 AL356010.1-201ENST00000456364 102 ntBASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 AC093166.4-201ENST00000457867 318 ntBASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 AC104233.1-201ENST00000458107 339 ntTSL 5 BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 AC093677.1-201ENST00000514414 678 ntBASIC7.42□□□□□ -1.22
LIMD1Q9UGP4 AC112206.3-201ENST00000514578 389 ntBASIC7.42□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms